New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2078281	35 (1.210)	9 (0.330)	9/250	1.9	25.0%	intergenic (+23/+92)	PP_1853/PP_1854	LysR family transcriptional regulator/hypothetical protein
	?	NC_002947	= 2078364	21 (0.770)					intergenic (+106/+9)	PP_1853/PP_1854	LysR family transcriptional regulator/hypothetical protein

CGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2078178‑2078281 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAA  <  NC_002947/2078364‑2078263                                                                                                                                                                                                                CGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGG                                                          >  1:303563/1‑150          ATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATAT                                                 >  1:350326/1‑150            CGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCC                                               >  2:115079/1‑150                 TTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTG                                          <  2:350326/150‑1                      GTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGC                                     <  1:115079/150‑1                          AGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGC                                 <  2:303563/150‑1                                           GGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCTCCCACAAGGGCCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGG                               <  1:505123/135‑1                                           GGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCTCCCACAAGGGCCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGG                               >  2:505123/1‑135                                                         GTTCGATGCCCTGCAGGCCTTTGAGAGAATTATTGTCTGAACCGGCCTCTGCGCGGGCCCGCCCGCTCCCACAAGGAACCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGGGCCCGCGACATGGTCGGCACAGGCAATAA  <  1:24902/150‑1                                                                                                                                                                                                                CGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2078178‑2078281 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAA  <  NC_002947/2078364‑2078263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.