New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2078281	35 (1.210)	9 (0.330)	9/250	1.9	25.0%	intergenic (+23/+92)	PP_1853/PP_1854	LysR family transcriptional regulator/hypothetical protein
	?	NC_002947	= 2078364	21 (0.770)					intergenic (+106/+9)	PP_1853/PP_1854	LysR family transcriptional regulator/hypothetical protein

ATCAGCCTGTATTTCGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCAT  >  NC_002947/2078133‑2078425                                                                                                                                                     |                                                                                                                                                 atCAGCCTGTATTTCGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCtt                                                                                                                                                 >  2:206746/1‑150 (MQ=255)  tCAGCCTGTATTTCGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCttt                                                                                                                                                >  1:113926/1‑150 (MQ=255)      ccTGTATTTCGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTcgc                                                                                                                                            >  2:317196/1‑150 (MQ=255)      ccTGTATTTCGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTcgc                                                                                                                                            <  1:206746/150‑1 (MQ=255)       cTGTATTTCGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTcgcg                                                                                                                                           >  2:12197/1‑150 (MQ=255)                gCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGgcccgccc                                                                                                                                  >  2:257711/1‑150 (MQ=255)                       acaAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCTGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCca                                                                                                                           <  1:116880/150‑1 (MQ=255)                       acaAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGTGCCCGCCCGCAcccc                                                                                                                           >  2:524735/1‑149 (MQ=255)                           gCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAgg                                                                                                                       >  1:600420/1‑150 (MQ=255)                                              cGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTcttcgcgggcccgcccgctcccacaaggaccccactgtcttcaggg                                                                                                    >  1:303563‑M1/1‑104 (MQ=255)                                                      cATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGaa                                                                                                      <  1:14138/140‑1 (MQ=255)                                                      cATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGaa                                                                                                      >  2:14138/1‑140 (MQ=255)                                                       aTCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTcttcgcgggcccgcccgctcccacaaggaccccactgtcttcagggctgtgatat                                                                                           >  1:350326‑M1/1‑95 (MQ=255)                                                         cGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTcttcgcgggcccgcccgctcccacaaggaccccactgtcttcagggctgtgatatcc                                                                                         >  2:115079‑M1/1‑93 (MQ=255)                                                              ttGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTcttcgcgggcccgcccgctcccacaaggaccccactgtcttcagggctgtgatatccctgtg                                                                                    <  2:350326‑M1/150‑63 (MQ=255)                                                              ttGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTtgtg                                                                                    <  2:374419/150‑1 (MQ=255)                                                                   gtggAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTcttcgcgggcccgcccgctcccacaaggaccccactgtcttcagggctgtgatatccctgtgggtgc                                                                               <  1:115079‑M1/150‑68 (MQ=255)                                                                    tggAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCCCAGGGATATCACAGCCCCGGAGACAGGGGGGTCCTTGTGGGAgcg                                                                              >  2:235827/1‑150 (MQ=255)                                                                       aGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTcttcgcgggcccgcccgctcccacaaggaccccactgtcttcagggctgtgatatccctgtgggtgcgggc                                                                           <  2:303563‑M1/150‑72 (MQ=255)                                                                         cAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgg                                                                         <  1:257711/150‑1 (MQ=255)                                                                          aGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGcgggcggg                                                                        <  1:603645/150‑1 (MQ=255)                                                                                      aGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgc                                                                               >  2:214125/1‑131 (MQ=255)                                                                                      aGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgc                                                                               <  1:214125/131‑1 (MQ=255)                                                                                        gggCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTtttcgcgggcccgcccgctcccacaagggccccactgtcttcagggctgtgatatccctgtgggtgcgggcgg                                                                         <  1:505123‑M1/135‑74 (MQ=255)                                                                                        gggCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTtttcgcgggcccgcccgctcccacaagggccccactgtcttcagggctgtgatatccctgtgggtgcgggcgg                                                                         >  2:505123‑M1/1‑62 (MQ=255)                                                                                                   gcggTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCttt                                                                                                                                                <  1:641181/53‑1 (MQ=255)                                                                                                   gcggTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCttt                                                                                                                                                >  2:641181/1‑53 (MQ=255)                                                                                                      gTTCGATGCCCTGCAGGCCTTTGAGAGAATTATTGTCTGAACCGGCCTctgcgcgggcccgcccgctcccacaaggaacccactgtcttcagggctgtgatatccctgtgggtgcgggcgggcccgcgacatggtcggcacaggcaataa                                            <  1:24902‑M1/150‑103 (MQ=255)                                                                                                      gTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTTAAGACACTGGGGGCCTTGTGGGAGCGGGCCGGCCCCGCAAAAGGCCGGGTCAGacaaaca                                            >  2:660859/1‑147 (MQ=255)                                                                                                          gATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCtt                                                                                       <  1:585355/103‑1 (MQ=255)                                                                                                          gATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCtt                                                                                       >  2:585355/1‑103 (MQ=255)                                                                                                             gCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCcgc                                                                   <  1:590708/120‑1 (MQ=255)                                                                                                             gCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCcgc                                                                   >  2:590708/1‑120 (MQ=255)                                                                                                             gCCCCGCTGGCGCTTTAGAGAATTTGTGCCTGTGCACGCTATTTCACACGTGTGCCCTTACCCTCGGGGAAATCCCCGTTCGGAACACAGGGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAAt                                     <  1:524735/150‑1 (MQ=255)                                                                                                              cccTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGa                                                                                                    >  2:368183/1‑86 (MQ=255)                                                                                                              cccTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGa                                                                                                    <  1:368183/86‑1 (MQ=255)                                                                                                              cccTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATg                                    <  1:317196/150‑1 (MQ=255)                                                                                                               ccTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGGCCGCGAAGAGGCCGGTTCAGACAACAACCACAATGa                                   >  2:162698/1‑150 (MQ=255)                                                                                                                 tGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAAc                                 <  2:600420/150‑1 (MQ=255)                                                                                                                      gcgcTTTAGAGAATTGTTGCCTGTCCCGGCCTGTTGGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGGGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATAc                            <  1:660859/147‑1 (MQ=255)                                                                                                                              aagaCTTATTCCCTGTGCCGGCCTTTGCGGGGGCCCGCCTTCACCCACAGGGATATCACAGCCCTGAATACAGTGGTGGCCTTGTGGCAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTgcgc                    <  2:113926/149‑1 (MQ=255)                                                                                                                               agaATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGa                                                                                 <  2:458679/88‑1 (MQ=255)                                                                                                                               agaATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGa                                                                                 >  1:458679/1‑88 (MQ=255)                                                                                                                                   ttattGCCTGTGCCGACCATGTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGTTCCTTGTGGGAGCGGGCGGGCCCGCGCAGaggccggttcagacaataattctctcaaaggcctgcagggcatcgaac               <  1:24902‑M2/150‑49 (MQ=255)                                                                                                                                                cGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCAt  >  2:509749/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                 ATCAGCCTGTATTTCGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCAT  >  NC_002947/2078133‑2078425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.