| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2078281 | 35 (1.210) | 9 (0.330) | 9/250 | 1.9 | 25.0% | intergenic (+23/+92) | PP_1853/PP_1854 | LysR family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 2078364 | 21 (0.770) | intergenic (+106/+9) | PP_1853/PP_1854 | LysR family transcriptional regulator/hypothetical protein | |||||
GTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGTCACCAGCCCGTCACCCTCGCCAATCTTC > NC_002947/2078234‑2078508 | gTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTTAAGACACTGGGGGCCTTGTGGGAGCGGGCCGGCCCCGCAAAAGGCCGGGTCAGacaaaca > 2:660859/1‑147 (MQ=255) gCCCCGCTGGCGCTTTAGAGAATTTGTGCCTGTGCACGCTATTTCACACGTGTGCCCTTACCCTCGGGGAAATCCCCGTTCGGAACACAGGGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAAt < 1:524735/150‑1 (MQ=255) cccTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATg < 1:317196/150‑1 (MQ=255) ccTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGGCCGCGAAGAGGCCGGTTCAGACAACAACCACAATGa > 2:162698/1‑150 (MQ=255) tGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAAc < 2:600420/150‑1 (MQ=255) gcgcTTTAGAGAATTGTTGCCTGTCCCGGCCTGTTGGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGGGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATAc < 1:660859/147‑1 (MQ=255) aagaCTTATTCCCTGTGCCGGCCTTTGCGGGGGCCCGCCTTCACCCACAGGGATATCACAGCCCTGAATACAGTGGTGGCCTTGTGGCAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTgcgc < 2:113926/149‑1 (MQ=255) ttattGCCTGTGCCGACCATGTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGTTCCTTGTGGGAGCGGGCGGGCCCGCGCAGaggccggttcagacaataattctctcaaaggcctgcagggcatcgaac < 1:24902‑M2/150‑49 (MQ=255) cGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCAt > 2:509749/1‑150 (MQ=255) ccgcccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGCCCTTGTGGGAGCGGGCGGGCCCGCGAAAaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagccc > 2:505123‑M2/1‑73 (MQ=255) ccgcccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGCCCTTGTGGGAGCGGGCGGGCCCGCGAAAaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagccc < 1:505123‑M2/135‑63 (MQ=255) gcccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactgct < 2:303563‑M2/150‑80 (MQ=255) ccgcACCAACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGt > 2:589555/1‑150 (MQ=255) gcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactgctccac < 1:115079‑M2/150‑84 (MQ=255) cACCCACAGGGAGATCACAGCGCAGAACACTGAGGGTACGCTGTGGGCGCGAGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTtgc < 1:162698/150‑1 (MQ=255) cacaGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactgctccaccacaa < 2:350326‑M2/150‑89 (MQ=255) ggATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactgctccaccacaaaatcg > 2:115079‑M2/1‑57 (MQ=255) atatCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactgctccaccacaaaatcgat > 1:350326‑M2/1‑55 (MQ=255) cccTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactgctccaccacaaaatcgatgaacgcccg > 1:303563‑M2/1‑46 (MQ=255) ccTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATAAACGATAc < 1:467899/80‑1 (MQ=255) ccTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATAAACGATAc > 2:467899/1‑80 (MQ=255) aaGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAGGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTaa > 1:366848/1‑150 (MQ=255) cTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCAcc < 2:367294/141‑1 (MQ=255) cTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCAcc > 1:367294/1‑141 (MQ=255) ttGGGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGCCGATCGTGGGGTAATAACCGTCACCAGcc > 2:363152/1‑150 (MQ=255) gAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTtgc < 1:75104/104‑1 (MQ=255) gAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTtgc > 2:75104/1‑104 (MQ=255) ggcgggcCCGCGAACAGCCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGTATCTCGTCATCCACTCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGTCACCAGCCCGTCACCCTCg < 1:235827/150‑1 (MQ=255) gcgAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGTCACCAGCCCGTCACCCTCGCCAATCTTc > 2:151671/1‑150 (MQ=255) gcgAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGTCACCAGCCCGTCACCCTCGCCAATCTTc < 1:509749/150‑1 (MQ=255) | GTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGTCACCAGCCCGTCACCCTCGCCAATCTTC > NC_002947/2078234‑2078508 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |