New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3415693 =	19 (0.660)	7 (0.260)	7/248	2.4	27.5%	coding (1591/1830 nt)	PP_3029	DNA cytosine methyltransferase family protein
	?	NC_002947	3415734 =	19 (0.700)					coding (1550/1830 nt)	PP_3029	DNA cytosine methyltransferase family protein

TCACCGTTGTTCAGGTGCCCGCAGCGATCCTGCCGCCGGAGTTGTTGGTGAAGGCCCGCAAGTGCGCTCACTTCCTGCACAAGTACCTGCCGGAGCACTTCCCCGATCTAGTCGACCTGGTGCTGCTCGGCGAGCACGCACTGGTCGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3415842‑3415693 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgactAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGACCAGCGCCATGCGCTCCTTGGTCGGCAGGGTGTGCAT  >  NC_002947/3415734‑3415879                                                                                                                                                                                                                                                                                                          TCACCGTTGTTCAGGTGCCCGCAGCGATCCTGCCGCCGGAGTTGTTGGTGAAGGCCCGCAAGTGCGCTCACTTCCTGCACAAGTACCTGCCGGAGCACTTCCCCGATCTAGTCGACCTGGTGCTGCTCGGCGAGCACGCACTGGTCGACT                                                                                                                                                    >  1:521363/1‑150   ACCGTTGTTCAGGTGCCCGCAGCGATCCTGCCGCCGGAGTTGTTGGTGAAGGCCCGCAAGTGCGCTCACTTCCTGCACAAGTACCTGCCGGAGCACTTCCCCGATCTAGTCGACCTGGTGCTGCTCGGCGAGCACGCACTGG                                                                                                                                                          <  1:652831/142‑1   ACCGTTGTTCAGGTGCCCGCAGCGATCCTGCCGCCGGAGTTGTTGGTGAAGGCCCGCAAGTGCGCTCACTTCCTGCACAAGTACCTGCCGGAGCACTTCCCCGATCTAGTCGACCTGGTGCTGCTCGGCGAGCACGCACTGG                                                                                                                                                          >  2:652831/1‑142                                                                                                                TCGACCTGGTGCTGCTCGGCGAGCACGCACTGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGACC                                     >  1:719421/1‑150                                                                                                                  GACCTGGTGCTGCTCGGCGAGCACGCACTGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGC                                                                                            <  1:391625/93‑1                                                                                                                  GACCTGGTGCTGCTCGGCGAGCACGCACTGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGC                                                                                            >  2:391625/1‑93                                                                                                                     CTGGTGCTGCTCGGCGAGCACGCACTGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGACCAGCGC                                >  1:677190/1‑150                                                                                                                          GCTGCTCGGCGAGCACGCACTGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTAC                                                                                                                         <  1:379409/56‑1                                                                                                                          GCTGCTCGGCGAGCACGCACTGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTAC                                                                                                                         >  2:379409/1‑56                                                                                                                           CTGCTCGGCGAGCACGCACTGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGACCAGCGCCATGCG                          <  2:677190/150‑1                                                                                                                                                   GACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACCACTCCGGCGGCAGGATCGCTGCGGTCACATGAACAACGGTGACCAGCGCAATGCGCTTCTTGGTCTGCAGGGTGTGCAT  >  2:347105/1‑150                                                                                                                                                                                                                                                                                                          TCACCGTTGTTCAGGTGCCCGCAGCGATCCTGCCGCCGGAGTTGTTGGTGAAGGCCCGCAAGTGCGCTCACTTCCTGCACAAGTACCTGCCGGAGCACTTCCCCGATCTAGTCGACCTGGTGCTGCTCGGCGAGCACGCACTGGTCGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3415842‑3415693 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgactAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGACCAGCGCCATGCGCTCCTTGGTCGGCAGGGTGTGCAT  >  NC_002947/3415734‑3415879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.