New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3415693 =	19 (0.660)	7 (0.260)	7/248	2.4	27.5%	coding (1591/1830 nt)	PP_3029	DNA cytosine methyltransferase family protein
	?	NC_002947	3415734 =	19 (0.700)					coding (1550/1830 nt)	PP_3029	DNA cytosine methyltransferase family protein

GGCCGGTTTCCTGGTTCTCGAACAGGCCGCGATCAAGGATGTAGTCGGGGCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGACCAGCGCCATGCGCTCCTTGGTCGGCAGGGTGTGCAT  >  NC_002947/3415591‑3415879                                                                                                                                                |                                                                                                                                                  ggCCGGTTTCCTGGTTCTCGAACAGGCCGCGATCAAGGATGTAGTCGGGGCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCgg                                                                                                                                             <  1:466058/150‑1 (MQ=255)    cGGTTTCCTGGTTCTCGAACAGGCCGCGATCAAGGATGTAGTCGGGGCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGa                                                                                                                                          >  1:147722/1‑150 (MQ=255)                 ctcGAACAGGCCGCGATCAAGGATGTAGTCGGGGCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAg                                                                                                                             <  1:298139/150‑1 (MQ=255)                                               ggggCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCg                                                                                               >  1:370757/1‑150 (MQ=255)                                                      aaGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTc                                                                                        >  1:202469/1‑150 (MQ=255)                                                               gcgagcTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCaacaac                                                                               >  2:4434/1‑150 (MQ=255)                                                                         gTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCa                                                                     <  2:147722/150‑1 (MQ=255)                                                                              ggggCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATc                                                                <  1:4434/150‑1 (MQ=255)                                                                                ggCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCgg                                                                                              <  1:453561/118‑1 (MQ=255)                                                                                ggCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCgg                                                                                              >  2:453561/1‑118 (MQ=255)                                                                                            gCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAg                                                                                                                             <  1:670948/75‑1 (MQ=255)                                                                                            gCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAg                                                                                                                             >  2:670948/1‑75 (MQ=255)                                                                                                    tGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACgg                                          >  2:194608/1‑150 (MQ=255)                                                                                                       AGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGa                                       >  1:521363‑M1/1‑150 (MQ=255)                                                                                                         tcgacctggtgctgctcggcgagcacgcactggtcgactAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGAcc                                     >  1:719421‑M2/40‑150 (MQ=255)                                                                                                           gacctggtgctgctcggcgagcacgcactggtcgactAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGc                                                                                            >  2:391625‑M2/38‑93 (MQ=255)                                                                                                           gacctggtgctgctcggcgagcacgcactggtcgactAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGc                                                                                            <  1:391625‑M2/56‑1 (MQ=255)                                                                                                             CCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGt                                         <  1:652831‑M1/142‑1 (MQ=255)                                                                                                             CCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGt                                         >  2:652831‑M1/1‑142 (MQ=255)                                                                                                              ctggtgctgctcggcgagcacgcactggtcgactAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGACCAgcgc                                >  1:677190‑M2/35‑150 (MQ=255)                                                                                                                   gctgctcggcgagcacgcactggtcgactAGATCGGGGAAGTGCTCCGGCAGGTAc                                                                                                                         <  1:379409‑M2/27‑1 (MQ=255)                                                                                                                   gctgctcggcgagcacgcactggtcgactAGATCGGGGAAGTGCTCCGGCAGGTAc                                                                                                                         >  2:379409‑M2/30‑56 (MQ=255)                                                                                                                    ctgctcggcgagcacgcactggtcgactAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGACCAGCGCCATgcg                          <  2:677190‑M2/122‑1 (MQ=255)                                                                                                                     tgcTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCGGGAATTGAGCGCACTTGCGGGACTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGACCAGCGCCATgcgc                         >  2:137202/1‑150 (MQ=255)                                                                                                                        tCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGACCAGCGCCATGCGCTcc                      >  2:220532/1‑150 (MQ=255)                                                                                                                           ccGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACACCTCCGGCGGCAGGATCGCTGCTGGCACCTGAACAACGGTGACCAGCGCCATGCGCTCCTTg                   <  2:300521/150‑1 (MQ=255)                                                                                                                                cagcaCCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTAAACAACGTTAATCAGTGCCATGCGCTCCTTGGTcag              >  2:301655/1‑148 (MQ=255)                                                                                                                                  gcaCCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGACCAGCGCCATGCGCTCCTTGGTCGGCa            <  1:333453/150‑1 (MQ=255)                                                                                                                                   caCCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGACCAGCGCCATGCGCTCCTTGGTCGGCAg           >  2:15557/1‑150 (MQ=255)                                                                                                                                            gactAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACCACTCCGGCGGCAGGATCGCTGCGGTCACATGAACAACGGTGACCAGCGCAATGCGCTTCTTGGTCTGCAGGGTGTGCAt  >  2:347105‑M2/5‑150 (MQ=255)                                                                                                                                                |                                                                                                                                                  GGCCGGTTTCCTGGTTCTCGAACAGGCCGCGATCAAGGATGTAGTCGGGGCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGACCAGCGCCATGCGCTCCTTGGTCGGCAGGGTGTGCAT  >  NC_002947/3415591‑3415879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.