| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3415693 = | 19 (0.660) | 7 (0.260) | 7/248 | 2.4 | 27.5% | coding (1591/1830 nt) | PP_3029 | DNA cytosine methyltransferase family protein |
| ? | NC_002947 | 3415734 = | 19 (0.700) | coding (1550/1830 nt) | PP_3029 | DNA cytosine methyltransferase family protein | |||||
GATCAGGCGGATCTGGTCGGTCTTATTGATGGGCCGCCATTCCAGATGGCCGGTTTCCTGGTTCTCGAACAGGCCGCGATCAAGGATGTAGTCGGGGCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGA > NC_002947/3415544‑3415842 | gATCAGGCGGATCTGGTCGGTCTTATTGATGGGCCGCCATTCCAGATGGCCGGTTTCCTGGTTCTCGAACAGGCCGCGATCAAGGATGTAGTCGGGGCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGaa < 2:404154/150‑1 (MQ=255) atgcacaccctgcagaccaagaagcgcattgcgctggtcaccgttgttcatgtgaccgcagcgatcctgccgccggagtggttggtgaaggcccgcaagtgcgctcacttcctgcacaagtacctgccggagcacttccccgatctAGTc > 2:347105‑M1/147‑150 (MQ=255) gCGGATCTGGTCGGTCTTATTGATGGGCCGCCATTCCAGATGGCCGGTTTCCTGGTTCTCGAACAGGCCGCGATCAAGGATGTAGTCGGGGCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGAc > 2:130976/1‑150 (MQ=255) gATGGGCCGCCATTCCAGATGGCCGGTTTCCTGGTTCTCGAACAGGCCGCGATCAAGGATGTAGTCGGGGCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGagcag < 1:130976/150‑1 (MQ=255) cgcatggcgctggtcaccgttgttcaggtgcccgcagcgatcctgccgccggagttgttggtgaaggcccgcaagtgcgctcacttcctgcacaagtacctgccggagcacttccccgatctAGTCGACCAGTGCGTGCTCGCCGagcag < 2:677190‑M1/28‑1 (MQ=255) gcgctggtcaccgttgttcaggtgcccgcagcgatcctgccgccggagttgttggtgaaggcccgcaagtgcgctcacttcctgcacaagtacctgccggagcacttccccgatctAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAg > 1:677190‑M1/117‑150 (MQ=255) ggtcaccgttgttcaggtgcccgcagcgatcctgccgccggagttgttggtgaaggcccgcaagtgcgctcacttcctgcacaagtacctgccggagcacttccccgatctAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGa > 1:719421‑M1/112‑150 (MQ=255) ttCCAGATGGCCGGTTTCCTGGTTCTCGAACAGGCCGCGATCAAGGATGTAGTCGGGGCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGAc < 1:239016/150‑1 (MQ=255) ggCCGGTTTCCTGGTTCTCGAACAGGCCGCGATCAAGGATGTAGTCGGGGCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCgg < 1:466058/150‑1 (MQ=255) cGGTTTCCTGGTTCTCGAACAGGCCGCGATCAAGGATGTAGTCGGGGCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGa > 1:147722/1‑150 (MQ=255) ctcGAACAGGCCGCGATCAAGGATGTAGTCGGGGCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAg < 1:298139/150‑1 (MQ=255) aaCAGGCCGCGATCAAGGATGTAGTCGGGGCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGAc > 1:192009/1‑89 (MQ=255) aaCAGGCCGCGATCAAGGATGTAGTCGGGGCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGAc < 2:192009/89‑1 (MQ=255) ggggCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCg > 1:370757/1‑150 (MQ=255) gcccgcaagtgcgctcacttcctgcacaagtacctgccggagcacttccccgatctAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTc < 1:391625‑M1/37‑1 (MQ=255) gcccgcaagtgcgctcacttcctgcacaagtacctgccggagcacttccccgatctAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTc > 2:391625‑M1/57‑93 (MQ=255) aaGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTc > 1:202469/1‑150 (MQ=255) gcgagcTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCaacaac > 2:4434/1‑150 (MQ=255) gTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCa < 2:147722/150‑1 (MQ=255) gtacctgccggagcacttccccgatctAGTCGACCAGTGCGTGCTCGCCGagcagc > 2:379409‑M1/28‑56 (MQ=255) gtacctgccggagcacttccccgatctAGTCGACCAGTGCGTGCTCGCCGagcagc < 1:379409‑M1/29‑1 (MQ=255) ggggCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATc < 1:4434/150‑1 (MQ=255) ggCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCgg < 1:453561/118‑1 (MQ=255) ggCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCgg > 2:453561/1‑118 (MQ=255) gCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAg < 1:670948/75‑1 (MQ=255) gCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAg > 2:670948/1‑75 (MQ=255) tGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACgg > 2:194608/1‑150 (MQ=255) AGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGa > 1:521363‑M1/1‑150 (MQ=255) | GATCAGGCGGATCTGGTCGGTCTTATTGATGGGCCGCCATTCCAGATGGCCGGTTTCCTGGTTCTCGAACAGGCCGCGATCAAGGATGTAGTCGGGGCTGAAGCCTTGAGCGAGCTTCAGTTCCGGGGCCTTGAGCATGCGGAGGGTGAAGTCGACCAGTGCGTGCTCGCCGAGCAGCACCAGGTCGACTAGATCGGGGAAGTGCTCCGGCAGGTACTTGTGCAGGAAGTGAGCGCACTTGCGGGCCTTCACCAACAACTCCGGCGGCAGGATCGCTGCGGGCACCTGAACAACGGTGA > NC_002947/3415544‑3415842 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |