New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3817397	17 (0.590)	8 (0.290)	6/256	2.7	32.7%	coding (337/2364 nt)	bamA‑II	outer membrane protein assembly factor
	?	NC_002947	= 3817408	NA (NA)					coding (348/2364 nt)	bamA‑II	outer membrane protein assembly factor

CGGGTTCTTCCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3817264‑3817397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGCTCAACTGGATGTCCTGGAAGAACCCGGTCT  <  NC_002947/3817408‑3817260                                                                                                                                                                                                                                                                                             CGGGTTCTTCCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGCCACGCATTGCTTCAGGCCC                                                                                                                                       <  1:24932/150‑1        TTCCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCCGATTGCTTCAGGCCC                                                                                                                                       >  1:248370/1‑143        TTCCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCCGATTGCTTCAGGCCC                                                                                                                                       <  2:248370/143‑1         TCCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCCGATTGCTTCAGGCCCTTCATCAG                                                                                                                               <  1:259726/150‑1                                                                                                  AACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCCGATTGCTTCAGGCCCT                                                                                                                                      <  1:453857/54‑1                                                                                                  AACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCCGATTGCTTCAGGCCCT                                                                                                                                      >  2:453857/1‑54                                                                                                     AAGGCGATCAGCACCGAAGACCTGATGAAGGGCCCGATTGCTTCAGGCCCT                                                                                                                                      <  1:295765/51‑1                                                                                                     AAGGCGATCAGCACCGAAGACCTGATGAAGGGCCCGATTGCTTCAGGCCCT                                                                                                                                      >  2:295765/1‑51                                                                                                                                   GGCCCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGCTCAACTG                         >  1:325669/1‑130                                                                                                                                   GGCCCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGCTCAACTG                         <  2:325669/130‑1                                                                                                                                    GCCCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGC                                <  1:607571/122‑1                                                                                                                                    GCCCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGC                                >  2:607571/1‑122                                                                                                                                     CCCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGCTCAACTGGATGTCCTGGAAGAACCCGGTC   <  1:403285/150‑1                                                                                                                                      CCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGCTCAACTGGATGTCCTGGAAGAACCCGGTCT  >  1:651835/1‑150                                                                                                                                      CCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGCTCAACTGGATGTCCTGGAAGAACCCGGTCT  <  2:11320/150‑1                                                                                                                                                                                                                                                                                             CGGGTTCTTCCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3817264‑3817397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGCTCAACTGGATGTCCTGGAAGAACCCGGTCT  <  NC_002947/3817408‑3817260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.