New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3817397	17 (0.590)	8 (0.290)	6/256	2.7	32.7%	coding (337/2364 nt)	bamA‑II	outer membrane protein assembly factor
	?	NC_002947	= 3817408	NA (NA)					coding (348/2364 nt)	bamA‑II	outer membrane protein assembly factor

TCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCGTGTGGCGCTGAAGA  >  NC_002947/3817323‑3817556                                                                                      |                                                                                                                                                     tCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAgc                                                                                      >  2:693574/1‑150 (MQ=34)           gTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGt                                                                            <  1:693574/150‑1 (MQ=35)                        aTCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGc                                                               >  1:591851/1‑150 (MQ=38)                                          aaGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGAc                                             >  1:246556/1‑150 (MQ=39)                                             gCGATCAGCACCGCAGACCTGATGAAGGGCCCGAAGCAATCGGGCCTGGCCGAAGGCGAGACCTTCCAGCGTGCCACCCTCCAAGCTGTACGTACCCAGCCGCAGCGCCAGTACGCGGCCCCAGCCCCCCACTCGGCACACGCCGACGcc                                          >  2:97734/1‑150 (MQ=11)                                                       ccGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGc                                >  1:528625/1‑150 (MQ=255)                                                       ccGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGc                                >  2:378782/1‑150 (MQ=255)                                                        cGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAggtgg                                   >  1:571109/1‑146 (MQ=255)                                                        cGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAggtgg                                   <  2:571109/146‑1 (MQ=255)                                                             aCCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCTGAGGTCGACGCCGAGGTGGTGCCGCAGc                          >  2:721651/1‑150 (MQ=255)                                                               cTGATGAAGGGCCTGAAGCAATCGGGCCTAGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCAGAGGTCGACGCCGAGGTGGTGCCGCAGCcg                        >  2:4354/1‑150 (MQ=255)                                                                      aGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTAc                                                                              >  2:459065/1‑89 (MQ=40)                                                                      aGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTAc                                                                              <  1:459065/89‑1 (MQ=40)                                                                       gggCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAgg                                                                   >  2:184871/1‑99 (MQ=38)                                                                       gggCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAgg                                                                   <  1:184871/99‑1 (MQ=38)                                                                         gCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCgtg              >  1:554355/1‑150 (MQ=255)                                                                         gCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTCCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAAGTGGTGCCGCAGCCGCGCAACCgtg              >  1:713057/1‑150 (MQ=255)                                                                             gAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCGTGTGgc          <  2:591851/150‑1 (MQ=255)                                                                              aaGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCGTGTGgcg         >  1:653326/1‑150 (MQ=255)                                                                                gCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCTGAGGCCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCGTGTGGCGCt       <  1:721651/150‑1 (MQ=255)                                                                                     cGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCGTGTGGCGCTGaaga  <  2:471028/150‑1 (MQ=255)                                                                                      |                                                                                                                                                     TCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCGTGTGGCGCTGAAGA  >  NC_002947/3817323‑3817556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.