| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3817397 | 17 (0.590) | 8 (0.290) | 6/256 | 2.7 | 32.7% | coding (337/2364 nt) | bamA‑II | outer membrane protein assembly factor |
| ? | NC_002947 | = 3817408 | NA (NA) | coding (348/2364 nt) | bamA‑II | outer membrane protein assembly factor | |||||
CGGGTTCTTCCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCGTGTG > NC_002947/3817264‑3817546 | cGGGTTCTTCCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGCCACgcattgcttcaggccc < 1:24932‑M1/150‑17 (MQ=255) ttcCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCcgattgcttcaggccc > 1:248370‑M1/1‑127 (MQ=255) ttcCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCcgattgcttcaggccc < 2:248370‑M1/143‑17 (MQ=255) tcCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCcgattgcttcaggcccttcatcag < 1:259726‑M1/150‑25 (MQ=255) tCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAgc > 2:693574/1‑150 (MQ=34) gTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGt < 1:693574/150‑1 (MQ=35) aTCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGc > 1:591851/1‑150 (MQ=38) aacaaGGCGATCAGCACCGAAGACCTGATGAAGGGCCcgattgcttcaggccct > 2:453857‑M1/1‑37 (MQ=255) aacaaGGCGATCAGCACCGAAGACCTGATGAAGGGCCcgattgcttcaggccct < 1:453857‑M1/54‑18 (MQ=255) aaGGCGATCAGCACCGAAGACCTGATGAAGGGCCcgattgcttcaggccct < 1:295765‑M1/51‑18 (MQ=255) aaGGCGATCAGCACCGAAGACCTGATGAAGGGCCcgattgcttcaggccct > 2:295765‑M1/1‑34 (MQ=255) aaGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGAc > 1:246556/1‑150 (MQ=39) gCGATCAGCACCGCAGACCTGATGAAGGGCCCGAAGCAATCGGGCCTGGCCGAAGGCGAGACCTTCCAGCGTGCCACCCTCCAAGCTGTACGTACCCAGCCGCAGCGCCAGTACGCGGCCCCAGCCCCCCACTCGGCACACGCCGACGcc > 2:97734/1‑150 (MQ=11) ccGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGc > 1:528625/1‑150 (MQ=255) ccGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGc > 2:378782/1‑150 (MQ=255) cGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAggtgg < 2:571109/146‑1 (MQ=255) cGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAggtgg > 1:571109/1‑146 (MQ=255) aCCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCTGAGGTCGACGCCGAGGTGGTGCCGCAGc > 2:721651/1‑150 (MQ=255) cTGATGAAGGGCCTGAAGCAATCGGGCCTAGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCAGAGGTCGACGCCGAGGTGGTGCCGCAGCcg > 2:4354/1‑150 (MQ=255) aGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTAc > 2:459065/1‑89 (MQ=40) aGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTAc < 1:459065/89‑1 (MQ=40) gggCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAgg < 1:184871/99‑1 (MQ=38) gggCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAgg > 2:184871/1‑99 (MQ=38) ggCCcgattgcttcaggcccttcatcaggtcttcggtgctgatcgccttgttgccttcaatctcgatgctcgacaccgacgggcgctcgaccacgttgatgatcagcacattgccatcgcggctcaactg < 2:325669‑M1/130‑127 (MQ=255) ggCCcgattgcttcaggcccttcatcaggtcttcggtgctgatcgccttgttgccttcaatctcgatgctcgacaccgacgggcgctcgaccacgttgatgatcagcacattgccatcgcggctcaactg > 1:325669‑M1/1‑4 (MQ=255) gCCcgattgcttcaggcccttcatcaggtcttcggtgctgatcgccttgttgccttcaatctcgatgctcgacaccgacgggcgctcgaccacgttgatgatcagcacattgccatcgcggc > 2:607571‑M1/1‑3 (MQ=255) gCCcgattgcttcaggcccttcatcaggtcttcggtgctgatcgccttgttgccttcaatctcgatgctcgacaccgacgggcgctcgaccacgttgatgatcagcacattgccatcgcggc < 1:607571‑M1/122‑120 (MQ=255) gCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCgtg > 1:554355/1‑150 (MQ=255) gCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTCCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAAGTGGTGCCGCAGCCGCGCAACCgtg > 1:713057/1‑150 (MQ=255) cccgattgcttcaggcccttcatcaggtcttcggtgctgatcgccttgttgccttcaatctcgatgctcgacaccgacgggcgctcgaccacgttgatgatcagcacattgccatcgcggctcaactggatgtcctggaagaacccggtc < 1:403285‑M1/150‑149 (MQ=255) ccgattgcttcaggcccttcatcaggtcttcggtgctgatcgccttgttgccttcaatctcgatgctcgacaccgacgggcgctcgaccacgttgatgatcagcacattgccatcgcggctcaactggatgtcctggaagaacccggtct < 2:11320‑M1/150‑150 (MQ=255) ccgattgcttcaggcccttcatcaggtcttcggtgctgatcgccttgttgccttcaatctcgatgctcgacaccgacgggcgctcgaccacgttgatgatcagcacattgccatcgcggctcaactggatgtcctggaagaacccggtct > 1:651835‑M1/1‑1 (MQ=255) | CGGGTTCTTCCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCGTGTG > NC_002947/3817264‑3817546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |