New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	883834 =	11 (0.380)	4 (0.180)	4/200	2.7	49.0%	intergenic (+69/‑259)	PP_0766/PP_0767	hypothetical protein/LuxR family transcriptional regulator
	?	NC_002947	883908 =	0 (0.000)					intergenic (+143/‑185)	PP_0766/PP_0767	hypothetical protein/LuxR family transcriptional regulator

CTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACGG  >  NC_002947/883840‑884038                                                                     |                                                                                                                                   CTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAAcctcc                                                                                                                    >  1:707567‑M1/1‑85 (MQ=255) CTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAAcctcc                                                                                                                    <  2:707567‑M1/85‑1 (MQ=255)                 ccgctcctaccgcggaacctgtaggagcgggttcacccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGccc                                                                                     <  1:552592‑M2/48‑1 (MQ=255)                 ccgctcctaccgcggaacctgtaggagcgggttcacccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGccc                                                                                     >  2:552592‑M2/53‑100 (MQ=255)                     tcctaccgcggaacctgtaggagcgggttcacccgcgaagaggccgggCAAGGCAATCAAcctcc                                                                                                                    <  1:65981‑M2/17‑1 (MQ=255)                     tcctaccgcggaacctgtaggagcgggttcacccgcgaagaggccgggCAAGGCAATCAAcctcc                                                                                                                    >  2:65981‑M2/49‑65 (MQ=255)                       CTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCca                             <  1:526242‑M1/150‑1 (MQ=255)                                           gcgggttcacccgcgaagaggccgggCAAGGCAATCAAcctcct                                                                                                                   <  1:68158‑M2/18‑1 (MQ=255)                                           gcgggttcacccgcgaagaggccgggCAAGGCAATCAAcctcct                                                                                                                   >  2:68158‑M2/27‑44 (MQ=255)                                           gcgggttcacccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGc                                                                 <  1:337833‑M2/68‑1 (MQ=255)                                           gcgggttcacccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGc                                                                 >  2:337833‑M2/27‑94 (MQ=255)                                                   acccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCt                                       >  1:224630‑M2/19‑112 (MQ=255)                                                   acccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCt                                       <  2:224630‑M2/94‑1 (MQ=255)                                                     ccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTc                                                         >  2:73558‑M2/17‑92 (MQ=255)                                                     ccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTc                                                         <  1:73558‑M2/76‑1 (MQ=255)                                                               gccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACgg  <  2:368190‑M2/131‑1 (MQ=255)                                                               gccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACgg  >  1:368190‑M2/7‑137 (MQ=255)                                                                     |                                                                                                                                   CTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACGG  >  NC_002947/883840‑884038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.