New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5164898	15 (0.650)	4 (0.180)	4/234	NT	16.7%	coding (3030/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	NC_002947	= 5164971	26 (1.200)					coding (2957/3906 nt)	hrpA	ATP‑dependent helicase HrpA

CTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5164744‑5164898 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttggcgAAGGCCGCGACCTGGCGGAACTGACCGCGCGCTTTGCTGCCGCCAGCCAGGCTGCCCTGGCCGTGCCGCGTGACGCCAAGGGTGAGCAGCCGGTGCAGGCCAAGGCCTTCAGCGAAGTGAAACAGACCGCCCAGCAGAAGATCGCC  <  NC_002947/5164971‑5164826                                                                                                                                                                                                                                                                                                               CTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCT                                                                                                                                                         <  1:381473/150‑1                           TCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGAAGGCCGCGACCTGGCGGAAC                                                                                                                               >  1:18466/1‑150                                                                                       ATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGAAGGCCGCGACCTGGCGGAACTGACCGCGCGCTTTGCTGCCGCCAGCCAGGCTGCCCTGGCCGTGCCGCGTGACGCCAAGG                                                                   <  2:18466/150‑1                                                                                                             TCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGAAGGCCGCGACCTGGCGGAACTGACCGCGCGCTTTGCTGCCGCCAGCCAGGCTGCCCTGGCCGTGCCGCGTGACGCCAAGGG                                                                  <  1:566482/129‑1                                                                                                             TCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGAAGGCCGCGACCTGGCGGAACTGACCGCGCGCTTTGCTGCCGCCAGCCAGGCTGCCCTGGCCGTGCCGCGTGACGCCAAGGG                                                                  >  2:566482/1‑129                                                                                                                                                        GGCGAAGGCCGCGACCTGGCGGAACTGACCGCGCGCTTTGCTGCCGCCAGCCAGGCTGCCCTGGCCGTGCCGCGTGACGCCAAGGGTGAGCAGCCGGTGCAGGCCAAGGCCTTCAGCGAAGTGAAACAGACCGCCCAGCAGAAGATCGCC  <  2:285372/150‑1                                                                                                                                                        GGCGAAGGCCGCGACCTGGCGGAACTGACCGCGCGCTTTGCTGCCGCCAGCCAGGCTGCCCTGGCCGTGCCGCGTGACGCCAAGGGTGAGCAGCCGGTGCAGGCCAAGGCCTTCAGCGAAGTGAAACAGACCGCCCAGCAGAAGATCGCC  <  2:466338/150‑1                                                                                                                                                                                                                                                                                                               CTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5164744‑5164898 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttggcgAAGGCCGCGACCTGGCGGAACTGACCGCGCGCTTTGCTGCCGCCAGCCAGGCTGCCCTGGCCGTGCCGCGTGACGCCAAGGGTGAGCAGCCGGTGCAGGCCAAGGCCTTCAGCGAAGTGAAACAGACCGCCCAGCAGAAGATCGCC  <  NC_002947/5164971‑5164826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.