New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5164898 | 15 (0.650) | 4 (0.180) | 4/234 | NT | 16.7% | coding (3030/3906 nt) | hrpA | ATP‑dependent helicase HrpA |
? | NC_002947 | = 5164971 | 26 (1.200) | coding (2957/3906 nt) | hrpA | ATP‑dependent helicase HrpA |
CTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5164744‑5164898 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttggcgAAGGCCGCGACCTGGCGGAACTGACCGCGCGCTTTGCTGCCGCCAGCCAGGCTGCCCTGGCCGTGCCGCGTGACGCCAAGGGTGAGCAGCCGGTGCAGGCCAAGGCCTTCAGCGAAGTGAAACAGACCGCCCAGCAGAAGATCGCC < NC_002947/5164971‑5164826 CTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCT < 1:381473/150‑1 TCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGAAGGCCGCGACCTGGCGGAAC > 1:18466/1‑150 ATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGAAGGCCGCGACCTGGCGGAACTGACCGCGCGCTTTGCTGCCGCCAGCCAGGCTGCCCTGGCCGTGCCGCGTGACGCCAAGG < 2:18466/150‑1 TCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGAAGGCCGCGACCTGGCGGAACTGACCGCGCGCTTTGCTGCCGCCAGCCAGGCTGCCCTGGCCGTGCCGCGTGACGCCAAGGG < 1:566482/129‑1 TCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGAAGGCCGCGACCTGGCGGAACTGACCGCGCGCTTTGCTGCCGCCAGCCAGGCTGCCCTGGCCGTGCCGCGTGACGCCAAGGG > 2:566482/1‑129 GGCGAAGGCCGCGACCTGGCGGAACTGACCGCGCGCTTTGCTGCCGCCAGCCAGGCTGCCCTGGCCGTGCCGCGTGACGCCAAGGGTGAGCAGCCGGTGCAGGCCAAGGCCTTCAGCGAAGTGAAACAGACCGCCCAGCAGAAGATCGCC < 2:285372/150‑1 GGCGAAGGCCGCGACCTGGCGGAACTGACCGCGCGCTTTGCTGCCGCCAGCCAGGCTGCCCTGGCCGTGCCGCGTGACGCCAAGGGTGAGCAGCCGGTGCAGGCCAAGGCCTTCAGCGAAGTGAAACAGACCGCCCAGCAGAAGATCGCC < 2:466338/150‑1 CTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5164744‑5164898 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttggcgAAGGCCGCGACCTGGCGGAACTGACCGCGCGCTTTGCTGCCGCCAGCCAGGCTGCCCTGGCCGTGCCGCGTGACGCCAAGGGTGAGCAGCCGGTGCAGGCCAAGGCCTTCAGCGAAGTGAAACAGACCGCCCAGCAGAAGATCGCC < NC_002947/5164971‑5164826 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |