New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5164898	15 (0.650)	4 (0.180)	4/234	NT	16.7%	coding (3030/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	NC_002947	= 5164971	26 (1.200)					coding (2957/3906 nt)	hrpA	ATP‑dependent helicase HrpA

GGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGACTCGTCCCAGGCCTCGTCCGACACACGTGCACCGGTCATGCGCAGCAGCTCCTGGCCCAGGGCCTGTGGC  >  NC_002947/5164826‑5165114                                                                                                                                                  |                                                                                                                                                ggCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTcgcc                                                                                                                                             <  2:285372‑M2/150‑5 (MQ=255) ggCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTcgcc                                                                                                                                             <  2:466338‑M2/150‑5 (MQ=255)         tctGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCGCGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACt                                                                                                                                     >  1:377085/1‑150 (MQ=255)                  cGGTTTGTTTCACTTCGCTGAAGGTCTTTGCCTGCACCGGCTGCTCACTCTTGGCGTCCCGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCGGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGc                                                                                                                            <  1:517394/150‑1 (MQ=255)                         tttCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGAc                                                                                                                     >  1:557057/1‑150 (MQ=255)                               ttCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGccc                                                                                                                                <  2:33089/133‑1 (MQ=255)                               ttCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGccc                                                                                                                                >  1:33089/1‑133 (MQ=255)                                            ttGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGGGCGCGGTCGGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATgcgc                                                                                                  >  1:230675/1‑150 (MQ=255)                                             tGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCa                                                                                                 <  1:158690/150‑1 (MQ=255)                                               gCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAgg                                                                                               >  2:75631/1‑150 (MQ=255)                                                 cTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTg                                                                                             >  2:233076/1‑150 (MQ=255)                                                             ctCACCCTTGGGGTCACGCGGCAGGGCCGGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTg                                                                                 <  2:310255/150‑1 (MQ=255)                                                              tCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTgg                                                                                >  1:383610/1‑150 (MQ=255)                                                              tCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTgg                                                                                <  1:613842/150‑1 (MQ=255)                                                                 cccTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTcgccaagggtgagcagccggtgcaggccaaggccttcagcgaagtga                                                                                                  >  2:566482‑M2/1‑82 (MQ=255)                                                                 cccTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTcgccaagggtgagcagccggtgcaggccaaggccttcagcgaagtga                                                                                                  <  1:566482‑M2/129‑48 (MQ=255)                                                                  ccTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTcgccaagggtgagcagccggtgcaggccaaggccttcagcgaagtgaaacagaccgcccagcagaagat                                                                            <  2:18466‑M2/150‑70 (MQ=255)                                                                  ccTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGa                                                                            >  1:126623/1‑150 (MQ=255)                                                                      ggCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTTCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGa                                                                        <  1:75631/150‑1 (MQ=255)                                                                          tCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGACTCg                                                                    >  2:71661/1‑150 (MQ=255)                                                                               cgGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGACTCGTCCCa                                                               >  2:88358/1‑150 (MQ=255)                                                                                ggCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGACTCGTCCCAg                                                              <  1:285372/150‑1 (MQ=255)                                                                                        cAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGACTCGTCCCAGGCCTCGTc                                                      <  2:383610/150‑1 (MQ=255)                                                                                                  tggctggcGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCGAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGACTCGTCCCAGGCCTCGTCCGACACACGt                                            <  1:586271/150‑1 (MQ=255)                                                                                                             agcaAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGACTCGTCCCAGGCCTCGTCCGACACACGTGCACCGGTCAt                                 >  1:467419/1‑150 (MQ=255)                                                                                                                  aGCGCGCGGCCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGACTCGTCCCAGGCCTCGTCCGCCACACGTGCACCGGTCATgcgcc                            >  2:184050/1‑149 (MQ=255)                                                                                                                          gTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGACTCGTCCCAGGCCTCGTCCGACACACGTGCACCGGTCATGCGCAGCAGCTcc                    >  2:138787/1‑150 (MQ=255)                                                                                                                             aGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGACTCGTCCCAGGCCTCGTCCGACACACGTGCACCGGTCATGCGCAGCAGCTCCTgg                 <  2:7042/150‑1 (MQ=255)                                                                                                                              gTTCCGCCAGGTCGCGGCCTTcgccaagggtgagcagccggtgcaggccaaggccttcagcgaagtgaaacagaccgcccagcagaagatcgccggcctgtcgatgaccgtgtacccggcactggtggaagacaacggcactgtgcgtga                >  1:18466‑M2/1‑21 (MQ=255)                                                                                                                                         tCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGACTCGTCCCAGGCCTCGTCCGACACACGTGCACCGGTCATGCGCAGCAGCTCCTGGCCCAGGGCCtgt     <  2:230675/150‑1 (MQ=255)                                                                                                                                           gcgGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGACTCGTCCCAGGCCTCGTCCGACACACGTGCACCGGTCATGCGCAGCAGCTCCTGGCCCAGGGCCTGTgg   <  2:377085/150‑1 (MQ=255)                                                                                                                                           acgGCCCTCGACAAGGTACATGCCCTGGCCATCAACCAATTCGATGTCAATACAAAAGTAGCCCTAGACATGGGTGAGCGGCTCGTCGCAGGCCTAGTCCGACACACGTGCACCGGTGAAGCGCAGCAGCAACTGGCACAGGGCCTGTgg   >  2:274568/2‑150 (MQ=255)                                                                                                                                            cgGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGACTCGTCCCAGGCCTCGTCCGACACACGTGCACCGGTCATGCGCAGCAGCTCCTGGCCCAGGGCCTGTGGc  <  1:466338/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                GGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGACTCGTCCCAGGCCTCGTCCGACACACGTGCACCGGTCATGCGCAGCAGCTCCTGGCCCAGGGCCTGTGGC  >  NC_002947/5164826‑5165114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.