New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5164898 | 15 (0.650) | 4 (0.180) | 4/234 | NT | 16.7% | coding (3030/3906 nt) | hrpA | ATP‑dependent helicase HrpA |
? | NC_002947 | = 5164971 | 26 (1.200) | coding (2957/3906 nt) | hrpA | ATP‑dependent helicase HrpA |
TCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGA > NC_002947/5164770‑5165044 | tCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGaaggccgcgacctggcggaac > 1:18466‑M1/1‑129 (MQ=255) ttCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCaaa > 1:7042/1‑150 (MQ=255) tCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGt > 2:158690/1‑150 (MQ=255) ggCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTcgcc < 2:466338‑M2/150‑5 (MQ=255) ggCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTcgcc < 2:285372‑M2/150‑5 (MQ=255) aTCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGaaggccgcgacctggcggaactgaccgcgcgctttgctgccgccagccaggctgccctggccgtgccgcgtgacgccaagg < 2:18466‑M1/150‑82 (MQ=255) tctGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCGCGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACt > 1:377085/1‑150 (MQ=255) cGGTTTGTTTCACTTCGCTGAAGGTCTTTGCCTGCACCGGCTGCTCACTCTTGGCGTCCCGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCGGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGc < 1:517394/150‑1 (MQ=255) tttCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGAc > 1:557057/1‑150 (MQ=255) tCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGaaggccgcgacctggcggaactgaccgcgcgctttgctgccgccagccaggctgccctggccgtgccgcgtgacgccaaggg > 2:566482‑M1/1‑47 (MQ=255) tCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGaaggccgcgacctggcggaactgaccgcgcgctttgctgccgccagccaggctgccctggccgtgccgcgtgacgccaaggg < 1:566482‑M1/129‑83 (MQ=255) ttCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGccc > 1:33089/1‑133 (MQ=255) ttCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGccc < 2:33089/133‑1 (MQ=255) ttGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGGGCGCGGTCGGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATgcgc > 1:230675/1‑150 (MQ=255) tGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCa < 1:158690/150‑1 (MQ=255) gCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAgg > 2:75631/1‑150 (MQ=255) cTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTg > 2:233076/1‑150 (MQ=255) ctCACCCTTGGGGTCACGCGGCAGGGCCGGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTg < 2:310255/150‑1 (MQ=255) tCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTgg < 1:613842/150‑1 (MQ=255) tCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTgg > 1:383610/1‑150 (MQ=255) cccTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTcgccaagggtgagcagccggtgcaggccaaggccttcagcgaagtga < 1:566482‑M2/129‑48 (MQ=255) cccTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTcgccaagggtgagcagccggtgcaggccaaggccttcagcgaagtga > 2:566482‑M2/1‑82 (MQ=255) ccTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTcgccaagggtgagcagccggtgcaggccaaggccttcagcgaagtgaaacagaccgcccagcagaagat < 2:18466‑M2/150‑70 (MQ=255) ccTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGa > 1:126623/1‑150 (MQ=255) ggCGaaggccgcgacctggcggaactgaccgcgcgctttgctgccgccagccaggctgccctggccgtgccgcgtgacgccaagggtgagcagccggtgcaggccaaggccttcagcgaagtgaaacagaccgcccagcagaagatcgcc < 2:285372‑M1/150‑147 (MQ=255) ggCGaaggccgcgacctggcggaactgaccgcgcgctttgctgccgccagccaggctgccctggccgtgccgcgtgacgccaagggtgagcagccggtgcaggccaaggccttcagcgaagtgaaacagaccgcccagcagaagatcgcc < 2:466338‑M1/150‑147 (MQ=255) ggCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTTCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGa < 1:75631/150‑1 (MQ=255) | TCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACCCTTGGCGTCACGCGGCACGGCCAGGGCAGCCTGGCTGGCGGCAGCAAAGCGCGCGGTCAGTTCCGCCAGGTCGCGGCCTTCGCCAAGGAACTTGCCCTGGCCATCGACCACTTCGATGTTCATGCGCAGGTGGCCCTCGACCTGGTTGACCGA > NC_002947/5164770‑5165044 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |