New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5480444	26 (1.120)	3 (0.140)	3/236	NT	10.1%	coding (920/993 nt)	prmA	ribosomal protein L11 methyltransferase
	?	NC_002947	= 5480514	29 (1.330)					coding (990/993 nt)	prmA	ribosomal protein L11 methyltransferase

CATGCCGGCGATGCAGGCCGACGTGCTGGTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5480289‑5480444 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcttaGCGACGCCGACCACTGATGCGCACCCAGCCGTCGCGCACGACGATCGGGTCCAGTTCAAAGTCGGCGGCATAAGCGGCGGCCACGTCTTCACCTTGCTCGGCGAGGATGCCCGAAAGCGCCAGCAGGCCACCTGGGCGAACCAGGCC  <  NC_002947/5480514‑5480368                                                                                                                                                                                                                                                                                                                 CATGCCGGCGATGCAGGCCGACGTGCTGGTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGC                                                                                                                                                           <  1:62932/150‑1  ATGCCGGCGATGCAGGCCGACGTGCTGGTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCC                                                                                                                                                          >  2:142631/1‑150                                                GCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTAGCGACGCCGACCACTGATGCGCACCCAGCCGTCGCGCACGA                                                                                                            >  2:13845/1‑150                                                                                     GGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTAGCGACGCCGACCACTGATGCGCACCCAGCCGTCGCGCACGACGATCGGGTCCAGTTCAAAGTCGGCGGCATAAGCGGC                                                                       <  1:13845/150‑1                                                                                                  GGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTAGCGACGCCGACCACTGATGCGCACCCAGCCGTCGCGCACGACGATCGGGTCCAGTTCAAAGTCGGCGGCATAAGCGGCGGCCACGTCTTCA                                                          <  1:142631/150‑1                                                                                                                                                          TTAGCGACGCCGACCACTGATGCGCACCCAGCCGTCGCGCACGACGATCGGGTCCAGTTCAAAGTCGGCGGCATAAGCGGCGGCCACGTCTTCACCTTGCTCGGCGAGGATGCCCGAAAGCGCCAGCAGGCCACCTGGGCGAACCAGGCC  <  1:545985/150‑1                                                                                                                                                                                                                                                                                                                 CATGCCGGCGATGCAGGCCGACGTGCTGGTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5480289‑5480444 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcttaGCGACGCCGACCACTGATGCGCACCCAGCCGTCGCGCACGACGATCGGGTCCAGTTCAAAGTCGGCGGCATAAGCGGCGGCCACGTCTTCACCTTGCTCGGCGAGGATGCCCGAAAGCGCCAGCAGGCCACCTGGGCGAACCAGGCC  <  NC_002947/5480514‑5480368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.