New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5480444	26 (1.120)	3 (0.140)	3/236	NT	10.1%	coding (920/993 nt)	prmA	ribosomal protein L11 methyltransferase
	?	NC_002947	= 5480514	29 (1.330)					coding (990/993 nt)	prmA	ribosomal protein L11 methyltransferase

GTGCTGGTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCA  >  NC_002947/5480311‑5480591                                                                                                                                      |                                                                                                                                                    gTGCTGGTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGaa                                                                                                                                     <  2:122796/150‑1 (MQ=255)   gCTGGTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACt                                                                                                                                   <  2:279806/150‑1 (MQ=255)                    tCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTgc                                                                                                                  >  1:365538/1‑150 (MQ=255)                    tCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTgc                                                                                                                  >  1:460738/1‑150 (MQ=255)                        cGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGa                                                                                                              <  2:576386/150‑1 (MQ=255)                         ggCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGAc                                                                                                             <  1:374166/150‑1 (MQ=255)                          gCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTAgcgacgccgaccactgatgcgcacccagccgtcgcgcacga                                                                                                            >  2:13845‑M1/1‑109 (MQ=255)                             cGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGAtcgtc                                                                                                                      <  2:567631/137‑1 (MQ=255)                             cGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGAtcgtc                                                                                                                      >  1:567631/1‑137 (MQ=255)                                                       tCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGc                                                                               <  2:460738/150‑1 (MQ=255)                                                       gccGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGCCCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGc                                                                               <  1:347560/149‑1 (MQ=255)                                                          ggCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCtaa                                                                            <  1:545985‑M2/150‑4 (MQ=255)                                                               ggTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTAgcgacgccgaccactgatgcgcacccagccgtcgcgcacgacgatcgggtccagttcaaagtcggcggcataagcggc                                                                       <  1:13845‑M1/150‑79 (MQ=255)                                                                            ggCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTAgcgacgccgaccactgatgcgcacccagccgtcgcgcacgacgatcgggtccagttcaaagtcggcggcataagcggcggccacgtcttca                                                          <  1:142631‑M1/150‑92 (MQ=255)                                                                             gCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCTCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACtttt                                                         <  2:545985/150‑1 (MQ=255)                                                                               ctgctgGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGGTAAGCGGGCCTAGAATACTTTTCt                                                       >  1:283960/1‑150 (MQ=255)                                                                               ctgctgGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCt                                                       >  2:30505/1‑150 (MQ=255)                                                                                tgctgGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCa                                                                                             >  1:354154/1‑111 (MQ=255)                                                                                tgctgGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCa                                                                                             <  2:354154/111‑1 (MQ=255)                                                                                         tttCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTcc                                             >  2:480785/1‑150 (MQ=255)                                                                                               gCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATc                                       <  2:365538/150‑1 (MQ=255)                                                                                                cATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTg                                                      >  1:65059/1‑134 (MQ=255)                                                                                                cATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTg                                                      <  2:65059/134‑1 (MQ=255)                                                                                                   ccTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATcgccg                                   >  2:590037/1‑150 (MQ=255)                                                                                                          gAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCGTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGAcc                            >  1:600594/1‑150 (MQ=255)                                                                                                          gAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGAcc                            <  1:590037/150‑1 (MQ=255)                                                                                                                  tGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCtaagcggcggccacgtcttcaccttgctcggcgaggatgcccgaaagcgccagcaggcc                    <  1:142631‑M2/150‑60 (MQ=255)                                                                                                                      gACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATcgcc                                    <  2:516053/130‑1 (MQ=255)                                                                                                                      gACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATcgcc                                    >  1:516053/1‑130 (MQ=255)                                                                                                                              cgccgcTTATGCCGCCGACTTTGAACTGTACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTg        >  1:544994/1‑150 (MQ=255)                                                                                                                               gccgcTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCtaagcggcggccacgtcttcaccttgctcggcgaggatgcccgaaagcgccagcaggccacctgggcgaacc       <  1:13845‑M2/150‑73 (MQ=255)                                                                                                                               gccgcTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGc       >  2:502882/1‑150 (MQ=255)                                                                                                                                    ttAgcgacgccgaccactgatgcgcacccagccgtcgcgcacgacgatcgggtccagttcaaagtcggcggcataagcggcggccacgtcttcaccttgctcggcgaggatgcccgaaagcgccagcaggccacctgggcgaaccaggcc  <  1:545985‑M1/150‑148 (MQ=255)                                                                                                                                      |                                                                                                                                                    GTGCTGGTTGCCAACATCCTCGCCGGCCCGCTGGTGTCGCTGGCGCCACAGTTGTCCGGCCTGGTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCGACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCA  >  NC_002947/5480311‑5480591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.