New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5716918	14 (0.610)	4 (0.180)	4/240	NT	19.3%	coding (370/708 nt)	PP_5019	16S rRNA (uracil(1498)‑N(3))‑methyltransferase
	?	NC_002947	= 5716973	20 (0.900)					coding (425/708 nt)	PP_5019	16S rRNA (uracil(1498)‑N(3))‑methyltransferase

CCACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5716838‑5716918 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcACGGTGTCACGCGCCTGTTCCAGGCCCAGGATCAGGTTCTCGCGAATGGTGTCGGGCTGCAGAAAGGGC  <  NC_002947/5716973‑5716905                                                                                                                                                        CCACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCACGGTGTCACGCGCCTGTTCCAGGCCCAGGATCAGGTTCTCGCGAATGGTGTCGGGCTGCAGAAAGGG   <  1:611284/149‑1 CCACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCACGGTGTCACGCGCCTGTTCCAGGCCCAGGATCAGGTTCTCGCGAATGGTGTCGGGCTGCAGAAAGGG   >  2:611284/1‑149                    GCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCACGGTGTCACGCGCCTGTTCCAGGCCCAGGATCAGGTTCTCGCGAATGGTGTCGGGCTGCAGAAAGGGC  >  1:179452/1‑131                    GCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCACGGTGTCACGCGCCTGTTCCAGGCCCAGGATCAGGTTCTCGCGAATGGTGTCGGGCTGCAGAAAGGGC  <  2:179452/131‑1                                                                                GCACGGTGTCACGCGCCTGTTCCAGGCCCAGGATCAGGTTCTCGCGAATGGTGTCGGGCTGCAGAAAGGGC  <  1:474155/71‑1                                                                                GCACGGTGTCACGCGCCTGTTCCAGGCCCAGGATCAGGTTCTCGCGAATGGTGTCGGGCTGCAGAAAGGGC  >  2:474155/1‑71                                                                                                                                                        CCACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5716838‑5716918 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcACGGTGTCACGCGCCTGTTCCAGGCCCAGGATCAGGTTCTCGCGAATGGTGTCGGGCTGCAGAAAGGGC  <  NC_002947/5716973‑5716905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.