| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5716918 | 14 (0.610) | 4 (0.180) | 4/240 | NT | 19.3% | coding (370/708 nt) | PP_5019 | 16S rRNA (uracil(1498)‑N(3))‑methyltransferase |
| ? | NC_002947 | = 5716973 | 20 (0.900) | coding (425/708 nt) | PP_5019 | 16S rRNA (uracil(1498)‑N(3))‑methyltransferase | |||||
CTGCCGCTGACCCTGGTGCTGGCGGTGCCTCGCCCCAAAATGCTGCGACGGCTGTTCCAGACCGTAGCCACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCTGGAACAGGCGCGTGACACCGTGCTGCCCGAGGTGATCATCGAAAAGCGCTTCAAGCCTTTTGTCGAAGACCGCCTGCCCACCATCGCCGCTGGCACCCTGGGCCTGGTCG > NC_002947/5716771‑5717062 | cTGCCGCTGACCCTGGTGCTGGCGGTGCCTCGCCCCAAAATGCTGCGACGGCTGTTCCAGACCGTAGCCACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGccc < 1:270468/150‑1 (MQ=255) tGCCGCTGACCCTGGTGCTGGCGGTGCCTCGCCCCAAAATGCTGCGACGGCTGTTCCAGACCGTAGCCACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCCCg > 1:377889/1‑150 (MQ=255) ccTGGTGCTGGCGGTGCCTCGCCCCAAAATGCTGCGACGGCTGTTCCAGACCGTAGCCACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCCCGACACCATTcg > 2:556103/1‑150 (MQ=255) ccTGGTGCTGGCGGTGCCTCGCCCCAAAATGCTGCGACGGCTGTTCCAGACCGTAGCCACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCCCGACACACTTcg > 2:309799/1‑150 (MQ=255) gCTGGCGGTGCCTCGCCCCAAAATGCTGCGACGGCTGTTCCAGACCGTAGCCACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCCCGACACCATTCGCGAGaa < 1:556103/150‑1 (MQ=255) cTGGCGGTGCCTCGCCCCAAAATGCTGCGACGGCTGTTCCAGACCGTAGCCACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCCCGACACCATTCGCGAGAAc < 1:528647/150‑1 (MQ=255) aaaaTGCTGCGACGGCTGTTCCAGACCGTAGCCACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCt < 1:263659/146‑1 (MQ=255) aaaaTGCTGCGACGGCTGTTCCAGACCGTAGCCACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCt > 2:263659/1‑146 (MQ=255) gCCACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCTGGAACAGGCGCGTGACACCGTGCTGCCCGAGGTg < 1:608792/150‑1 (MQ=255) ccACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCacggtgtcacgcgcctgttccaggcccaggatcaggttctcgcgaatggtgtcgggctgcagaaaggg > 2:611284‑M1/1‑81 (MQ=255) ccACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCacggtgtcacgcgcctgttccaggcccaggatcaggttctcgcgaatggtgtcgggctgcagaaaggg < 1:611284‑M1/149‑69 (MQ=255) cgcgGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAACGCTTCTGGCAAACGCCCTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCTGGAACAGgc < 1:554598/109‑1 (MQ=255) cgcgGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCTGGAACAGgc > 2:554598/1‑109 (MQ=255) gCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCacggtgtcacgcgcctgttccaggcccaggatcaggttctcgcgaatggtgtcgggctgcagaaagggc > 1:179452‑M1/1‑62 (MQ=255) gCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCacggtgtcacgcgcctgttccaggcccaggatcaggttctcgcgaatggtgtcgggctgcagaaagggc < 2:179452‑M1/131‑70 (MQ=255) ctgctgAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCTGGAACAGGCGCGTGACACCGTGCTGCCCGAGGTGatcat < 2:36861/128‑1 (MQ=255) ctgctgAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCTGGAACAGGCGCGTGACACCGTGCTGCCCGAGGTGatcat > 1:36861/1‑128 (MQ=255) aaCAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCTGGAACAGGCGCGTGACACCGTGCTGCCCGAGGTGATCATCGAAAAGCGCTTCAAGCCTTTTGTCGaa < 1:593230/150‑1 (MQ=255) tCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCTGGAACAGGCGCGTGACACCGTGCTGCCCGAGGTGATCATCGAAAAGCGCTTCAAGCCTTTTGTCGAAGACCGCCTGCcca > 1:158287/1‑150 (MQ=255) gCCCTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCTGGAACAGGCGCGTGACACCGTgctgcagaaagggcgtttgccagaagcttttctcgaccttgtagctgttcagcaggatcagc < 2:179452‑M2/131‑63 (MQ=255) gCCCTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCTGGAACAGGCGCGTGACACCGTgctgcagaaagggcgtttgccagaagcttttctcgaccttgtagctgttcagcaggatcagc > 1:179452‑M2/1‑69 (MQ=255) gCCCTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCTGGAACAGGCGCGTGACACCGTgc < 1:474155‑M2/71‑3 (MQ=255) gCCCTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCTGGAACAGGCGCGTGACACCGTgc > 2:474155‑M2/1‑69 (MQ=255) cccTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCTGGAACAGGCGCGTGACACCGTgctgcagaaagggcgtttgccagaagcttttctcgaccttgtagctgttcagcaggatcagccgcggcacgcccagcgtgg < 1:611284‑M2/149‑82 (MQ=255) cccTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCTGGAACAGGCGCGTGACACCGTgctgcagaaagggcgtttgccagaagcttttctcgaccttgtagctgttcagcaggatcagccgcggcacgcccagcgtgg > 2:611284‑M2/1‑68 (MQ=255) tGCAGCCCGACACCATTCGCGAGAACCTGATCCTGAGCCTGGAACAGGCGCGTGACACCGTGCTGCCCGAGGTGATCATCGAAAAGCGCTTAAAGCCTTTTGTCGAAGACCGCCTGCCCACCATCGCCGCTGGCACCCTGGGCCTGGTCg < 2:158287/150‑1 (MQ=255) gcacggtgtcacgcgcctgttccaggcccaggatcaggttctcgcgaatggtgtcgggctgcagaaagggc < 1:474155‑M1/71‑70 (MQ=255) gcacggtgtcacgcgcctgttccaggcccaggatcaggttctcgcgaatggtgtcgggctgcagaaagggc > 2:474155‑M1/1‑2 (MQ=255) | CTGCCGCTGACCCTGGTGCTGGCGGTGCCTCGCCCCAAAATGCTGCGACGGCTGTTCCAGACCGTAGCCACGCTGGGCGTGCCGCGGCTGATCCTGCTGAACAGCTACAAGGTCGAGAAAAGCTTCTGGCAAACGCCCTTTCTGCAGCCCGACACCATTCGCGAGAACCTGATCCTGGGCCTGGAACAGGCGCGTGACACCGTGCTGCCCGAGGTGATCATCGAAAAGCGCTTCAAGCCTTTTGTCGAAGACCGCCTGCCCACCATCGCCGCTGGCACCCTGGGCCTGGTCG > NC_002947/5716771‑5717062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |