| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 620579 | 18 (0.780) | 3 (0.140) | 3/238 | NT | 16.6% | coding (114/693 nt) | PP_0534 | transcriptional regulator PfeR |
| ? | NC_002947 | = 620643 | 13 (0.590) | coding (50/693 nt) | PP_0534 | transcriptional regulator PfeR | |||||
ATGCGGTCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACCGGCACTGCCTGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/620427‑620579‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcaggACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCCTGAATGCCATACAGCAATCTCAGTTCGAACTGGTGCTGCTGGACATCATGCTGCCAGGCATCGACGGCCTCAGCCTGCTCGAC < NC_002947/620643‑620495 ATGCGGTCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACCGGCACTGCCTGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTC < 1:388781/150‑1ATGAGGTCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACCGGCACTGCCTGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTC > 1:87339/1‑150 TGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCG > 2:398279/1‑150 CAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCCTGAAT < 1:482606/150‑1 GGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCCTGAATGCCATACA < 1:398279/150‑1 TCAGGACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCC < 1:485772/71‑1 TCAGGACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCC > 2:485772/1‑71 CAGGACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCCTGAATGCCATACAGCAATCTCAGTTCGAACTGGTGCTGCTGGACATCATGCTGCCAGGCATCGACGGCCTCAGCCTGCTC > 1:466026/1‑150 GGACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCCTGAATGCCATACAGCAATCT < 1:116958/88‑1 GGACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCCTGAATGCCATACAGCAATCT > 2:116958/1‑88 GACCTTGACCGCGATTTCCGCAACCGCGGTTGCCTGGTGCACGCCTGCGGCAGCGGCACCCAGGCCCTGAATGCCATACAGCAATCTCAGTGCGGACTGGTTCTGCTGGACATCATGCTGCCAGGCATCGACGGCCTCAGCCTtcgggag > 2:23321/1‑143 ATGCGGTCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACCGGCACTGCCTGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/620427‑620579‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcaggACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCCTGAATGCCATACAGCAATCTCAGTTCGAACTGGTGCTGCTGGACATCATGCTGCCAGGCATCGACGGCCTCAGCCTGCTCGAC < NC_002947/620643‑620495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |