New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 620579	18 (0.780)	3 (0.140)	3/238	NT	16.6%	coding (114/693 nt)	PP_0534	transcriptional regulator PfeR
	?	NC_002947	= 620643	13 (0.590)					coding (50/693 nt)	PP_0534	transcriptional regulator PfeR

GTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTGGGTCGTCTTCGGCAAGGAGAAGTGAGGTGGGCACGGCGAGCCTTGATGAGAATTTTTATCAGTTGCGAATCATCCCACTGGCTGCAGGGAAAGGGCAACGCCTTGATGTGTTAAGAAGGTTAA  >  NC_002947/620495‑620781                                                                                                                                                     |                                                                                                                                           ctcccgaaggctgagGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGAACCAGTCCGCACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGCCGCAGGCGTGCACCAGGCAACCGCGGTTGCGGAAATCGCGGTCAAGGTc                                                                                                                                           >  2:23321‑M2/8‑149 (MQ=255)    gAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTcctg                                                                                                                                        >  1:466026‑M2/1‑146 (MQ=255)        aGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGc                                                                                                                                    <  2:376439/150‑1 (MQ=255)                gCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTgg                                                                                                                            <  1:544254/150‑1 (MQ=255)                          ccTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTGGGTCGTCTTCg                                                                                                                  <  2:437991/150‑1 (MQ=255)                              gcagcaTGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTGGGTCGTCTTCGGCaa                                                                                                              <  1:219736/150‑1 (MQ=255)                                       tgTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCACCGTTCTTAAGCAGGCGTGGGTCGTCTTCGGCAAGGAGAAGTg                                                                                                     >  1:6196/1‑150 (MQ=255)                                               agcaCCAGTTCGAACCGAGATTTCTGTATGGCATGCAGGGCCTGGGTGCCGCGGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTGGGTCGTCTTCGGCAAGGAGAAGTGAGGTGGGc                                                                                             <  2:246220/150‑1 (MQ=255)                                                                agaTTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTcc                                                                                                                                          <  1:116958‑M2/88‑3 (MQ=255)                                                                agaTTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTcc                                                                                                                                          >  2:116958‑M2/1‑86 (MQ=255)                                                                      cTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTGGGTCGTCTTCGGCAAGGAGAAGTGAGGTGGGCACGGCGAGCCTTGATGAGAAttt                                                                      >  2:186193/1‑150 (MQ=255)                                                                       tGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTcctgaatgccatacagcaatctcagttcgaactggtgctgctggacatcatgctgccaggcatcgacggcc                                                                     <  1:398279‑M2/150‑72 (MQ=255)                                                                               aTTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTcctgaatgccatacagcaatctcagttcgaactggtgctgctggacatcatgctgccaggcatcgacggcctcagcctg                                                             <  1:482606‑M2/150‑80 (MQ=255)                                                                                    gggCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTcctga                                                                                                                                       >  2:485772‑M2/1‑66 (MQ=255)                                                                                    gggCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTcctga                                                                                                                                       <  1:485772‑M2/71‑6 (MQ=255)                                                                                                      cgcAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTcctgaatgccatacagcaatctcagttcgaactggtgctgctggacatcatgctgccaggcatcgacggcctcagcctgctcgacgccctgcgccgccagca                                      >  2:398279‑M2/1‑48 (MQ=255)                                                                                                       gcAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGt                                                                                                                              >  2:352312/1‑61 (MQ=255)                                                                                                       gcAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGt                                                                                                                              <  1:352312/61‑1 (MQ=255)                                                                                                                          ccGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTGGGTCGTCTTCGGCAAGGAGAAGTGAGGTGGGCACGGCGAGCCTtgatga                                                                            >  1:375699/1‑92 (MQ=255)                                                                                                                          ccGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTGGGTCGTCTTCGGCAAGGAGAAGTGAGGTGGGCACGGCGAGCCTtgatga                                                                            <  2:375699/92‑1 (MQ=255)                                                                                                                            gcgGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTGGGTCGTCTTCGGCAAGGAGAAGTGAGGTGGGCACGGCGAGCCTTGATGAGAATTTTTATCAGTTGCGAATCATCCCACTGGCTGCAGGGAAAGGGCAACGCCTTGAtgt                <  2:607540/150‑1 (MQ=255)                                                                                                                                      aaaTGGCGGTGCAGGTCCTGAAGCAGGCGTGGGTCGTCTTGGGCAAGGAGAAGTGAGGTGGGCACGGCGAGCCTTGATGAGAATTTTTATCAGTTGCGAATCATCCCACTGGCTGCAGGGAAAGGGCAACGCCTTGATGTGTTAAGAAgg      <  1:5683/150‑1 (MQ=255)                                                                                                                                          ggCGGTCCAGGTCCTGAAGCAGGCGTGGGTCGTCTTCGGCAAGGAGAAGTGAGGTGGGCACGGCGAGCCTTGATGAGAATTTTTATCAGTTGCGAATCATCCCACTGGCTGCAGGGAAAGGGCAACGCCTTGATGTGTTAAGAAGGTTaa  <  1:186193/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                           GTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTGGGTCGTCTTCGGCAAGGAGAAGTGAGGTGGGCACGGCGAGCCTTGATGAGAATTTTTATCAGTTGCGAATCATCCCACTGGCTGCAGGGAAAGGGCAACGCCTTGATGTGTTAAGAAGGTTAA  >  NC_002947/620495‑620781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.