| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 620579 | 18 (0.780) | 3 (0.140) | 3/238 | NT | 16.6% | coding (114/693 nt) | PP_0534 | transcriptional regulator PfeR |
| ? | NC_002947 | = 620643 | 13 (0.590) | coding (50/693 nt) | PP_0534 | transcriptional regulator PfeR | |||||
TCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACCGGCACTGCCTGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTGGGTCGTCTTCGGCAAGGAGAAGTGAGGTGGGCACGGCGAGCCTTGATGAGAATTTTTATCAGTTGCGAAT > NC_002947/620433‑620728 | tCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACCGGCACTGCCTGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGcc > 1:52865/1‑150 (MQ=255) tGCTCGGCCCCTAGTGCCGACATCAGCATGACCGGCACTGCCTGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGCTGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCTTTCAGGGCTTgg < 2:87339/150‑1 (MQ=255) gCTCGGCCCCTAGTGCCGACATCAGCATGACCGGCACTGCCTGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTggg < 2:138775/150‑1 (MQ=255) aCATCAGCATGACCGGCACTGCCTGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGt < 2:52865/150‑1 (MQ=255) cATGACCGGCACTGCCTGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGTGTGCACCAg < 1:228292/150‑1 (MQ=255) gCACTGCCTGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACcgc < 1:468158/150‑1 (MQ=255) aCTGCCTGCTGGCGGCGCAGGGCGTCGGGCAGGCTGAGGCCGTCGATGCCTGGCCGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCAGCAGGAAACCGCgg < 2:30951/150‑1 (MQ=255) tgctgGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGacctggaccgccatttccgcaaccgcggtttcctggtgcacgcctgcg > 2:398279‑M1/1‑102 (MQ=255) tgGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGaaa > 1:607540/1‑150 (MQ=255) ggcggcGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAAt < 1:581221/150‑1 (MQ=255) gcgcAGGGCGTCTAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGGCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTGGCGGAAATGGCg < 2:83638/150‑1 (MQ=255) ctcccgaaggctgagGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGAACCAGTCCGCACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGCCGCAGGCGTGCACCAGGCAACCGCGGTTGCGGAAATCGCGGTCAAGGTc > 2:23321‑M2/8‑149 (MQ=255) gAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTcctg > 1:466026‑M2/1‑146 (MQ=255) cAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGacctggaccgccatttccgcaaccgcggtttcctggtgcacgcctgcgccagcggcacccaggccctgaat < 1:482606‑M1/150‑72 (MQ=255) aGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGc < 2:376439/150‑1 (MQ=255) ggCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGacctggaccgccatttccgcaaccgcggtttcctggtgcacgcctgcgccagcggcacccaggccctgaatgccataca < 1:398279‑M1/150‑80 (MQ=255) gCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGc < 2:119524/80‑1 (MQ=255) gCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGc > 1:119524/1‑80 (MQ=255) gCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTgg < 1:544254/150‑1 (MQ=255) ccTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTGGGTCGTCTTCg < 2:437991/150‑1 (MQ=255) gcagcaTGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTGGGTCGTCTTCGGCaa < 1:219736/150‑1 (MQ=255) tgTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCACCGTTCTTAAGCAGGCGTGGGTCGTCTTCGGCAAGGAGAAGTg > 1:6196/1‑150 (MQ=255) agcaCCAGTTCGAACCGAGATTTCTGTATGGCATGCAGGGCCTGGGTGCCGCGGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTGGGTCGTCTTCGGCAAGGAGAAGTGAGGTGGGc < 2:246220/150‑1 (MQ=255) agaTTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTcc > 2:116958‑M2/1‑86 (MQ=255) agaTTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTcc < 1:116958‑M2/88‑3 (MQ=255) cTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTGGGTCGTCTTCGGCAAGGAGAAGTGAGGTGGGCACGGCGAGCCTTGATGAGAAttt > 2:186193/1‑150 (MQ=255) tGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTcctgaatgccatacagcaatctcagttcgaactggtgctgctggacatcatgctgccaggcatcgacggcc < 1:398279‑M2/150‑72 (MQ=255) aTTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTcctgaatgccatacagcaatctcagttcgaactggtgctgctggacatcatgctgccaggcatcgacggcctcagcctg < 1:482606‑M2/150‑80 (MQ=255) tCAGGacctggaccgccatttccgcaaccgcggtttcctggtgcacgcctgcgccagcggcacccaggccc < 1:485772‑M1/71‑67 (MQ=255) tCAGGacctggaccgccatttccgcaaccgcggtttcctggtgcacgcctgcgccagcggcacccaggccc > 2:485772‑M1/1‑5 (MQ=255) cAGGacctggaccgccatttccgcaaccgcggtttcctggtgcacgcctgcgccagcggcacccaggccctgaatgccatacagcaatctcagttcgaactggtgctgctggacatcatgctgccaggcatcgacggcctcagcctgctc > 1:466026‑M1/1‑4 (MQ=255) gggCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTcctga < 1:485772‑M2/71‑6 (MQ=255) gggCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTcctga > 2:485772‑M2/1‑66 (MQ=255) ggacctggaccgccatttccgcaaccgcggtttcctggtgcacgcctgcgccagcggcacccaggccctgaatgccatacagcaatct > 2:116958‑M1/1‑2 (MQ=255) ggacctggaccgccatttccgcaaccgcggtttcctggtgcacgcctgcgccagcggcacccaggccctgaatgccatacagcaatct < 1:116958‑M1/88‑87 (MQ=255) gaccttgaccgcgatttccgcaaccgcggttgcctggtgcacgcctgcggcagcggcacccaggccctgaatgccatacagcaatctcagtgcggactggttctgctggacatcatgctgccaggcatcgacggcctcagccttcgggag > 2:23321‑M1/1‑1 (MQ=255) | TCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACCGGCACTGCCTGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGGCCTGGGTGCCGCTGGCGCAGGCGTGCACCAGGAAACCGCGGTTGCGGAAATGGCGGTCCAGGTCCTGAAGCAGGCGTGGGTCGTCTTCGGCAAGGAGAAGTGAGGTGGGCACGGCGAGCCTTGATGAGAATTTTTATCAGTTGCGAAT > NC_002947/620433‑620728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |