New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3494626	27 (1.170)	3 (0.140)	3/238	NT	11.2%	coding (102/483 nt)	PP_3098	hypothetical protein
	?	NC_002947	= 3494655	22 (1.000)					coding (73/483 nt)	PP_3098	hypothetical protein

GAAGTCCGGCATGCCGTATTCAAGGATGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCATGTGTCATCCCTGTACACAACGGCCTTTCAGCCGCGCGCGCCCTGTGG  >  NC_002947/3494494‑3494774                                                                                                                                     |                                                                                                                                                     gaAGTCCGGCATGCCGTATTCAAGGATGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGtgcgctg                                                                                                                                     >  2:39372/1‑150 (MQ=255)   aGTCCGGCAGGCCGTATTCAAGGATGGCCCCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGtgcgctgcg                                                                                                                                   <  2:130924/150‑1 (MQ=255)    gTCCGGCATGCCGTATTCAAGGATGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACAAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGtgcgctgcgc                                                                                                                                  >  1:599624/1‑150 (MQ=255)               cGTATTCAAGGATGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCga                                                                                                                       <  1:462927‑M2/150‑3 (MQ=255)                 tATTCAAGGATGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCggcc                                                                                                                     <  2:500304‑M2/150‑5 (MQ=255)                      aaGGATGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGtgcgctgc                                                                                                                                    >  2:570321/1‑130 (MQ=255)                      aaGGATGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGtgcgctgc                                                                                                                                    <  1:570321/130‑1 (MQ=255)                       aGGATGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCgagcccgcagcgcagcgcacctgctcgctggccgagtac                                                                                                               <  1:83155‑M1/150‑40 (MQ=255)                         gATGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTa                                                                                                             <  2:599624/150‑1 (MQ=255)                          aTGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAg                                                                                                            <  1:39372/150‑1 (MQ=255)                           tGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAgg                                                                                                           <  2:60311/150‑1 (MQ=255)                                ccaccGAGCTGGCTGAAACCGTCGAGCTCTTCGCCGAGCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGa                                                                                                      >  1:357397/1‑150 (MQ=255)                                 caccGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCGCGGCCGACTGGTAGGGACGAt                                                                                                     >  1:465144/1‑150 (MQ=255)                                           gctgAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGt                                                                                                                                           >  2:559088/1‑102 (MQ=255)                                           gctgAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGt                                                                                                                                           <  1:559088/102‑1 (MQ=255)                                           gctgAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCgg                                                                                                                             >  1:459045/1‑116 (MQ=255)                                           gctgAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCgg                                                                                                                             <  2:459045/116‑1 (MQ=255)                                             tgAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAgtc                                                                                         >  1:25530/1‑150 (MQ=255)                                             ggAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTTGTAGGGACGATCGTCCAGCAgtc                                                                                         <  2:161460/149‑1 (MQ=255)                                                         gCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGa                                                                                                         >  1:600484/1‑122 (MQ=255)                                                         gCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGa                                                                                                         <  2:600484/122‑1 (MQ=255)                                                          ctctTCGGCGACCAGGGACTGGCGAGTCGGCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGa                                                                            <  1:403116/150‑1 (MQ=255)                                                             ttCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCgctgcgctgc                                                                                                                               >  2:119901/1‑96 (MQ=255)                                                             ttCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCgctgcgctgc                                                                                                                               <  1:119901/96‑1 (MQ=255)                                                                             tGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCgagcccgcagcgcagcgcacctgctcgctggccga                                                                                                                   <  1:133211‑M1/92‑36 (MQ=255)                                                                             tGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCgagcccgcagcgcagcgcacctgctcgctggccga                                                                                                                   >  2:133211‑M1/1‑57 (MQ=255)                                                                              ggCGGGTGTTCACCAGGACTTCGAGGGCGCGGACGATGCTGGTCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGCCCCGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGt                                                        <  2:71811/150‑1 (MQ=255)                                                                                cGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTa                                                      <  1:500304/150‑1 (MQ=255)                                                                                         aCCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCATgtgt                                             >  1:315129/1‑150 (MQ=255)                                                                                          ccAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCATGTGTc                                            >  1:507074/1‑150 (MQ=255)                                                                                                                     tGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATGGTCCAGCCGTCGGTCGAGCAGCGAGGTCAGGAGGCGGGGCTGGTTACTCGTGTGTCATCCCTGTAGACAACGGCCCTTCAGcc                 >  2:284071/1‑150 (MQ=255)                                                                                                                            gTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCggccgagtacaaggccagcatcgtccgcgacctcgaagtcctggtgaacacccgccagtccctggtcgccgaagagctcgacggtttcagccagctcggtggttccatcct          <  1:83155‑M2/150‑112 (MQ=255)                                                                                                                                tCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCggccgagtacaaggccagcatcgtccgcgacctcgaagtcctggtgaacacccgcca                                                                >  2:133211‑M2/1‑35 (MQ=255)                                                                                                                                tCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCggccgagtacaaggccagcatcgtccgcgacctcgaagtcctggtgaacacccgcca                                                                <  1:133211‑M2/92‑58 (MQ=255)                                                                                                                                tCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCATGTGTCATCCCTGTACACAACGGCCTTTCAGCCGCGCGCGCCCt      >  1:470859/1‑150 (MQ=255)                                                                                                                                  ggCCgagcccgcagcgcagcgcacctgctcgctggccgagtacaaggccagcatcgtccgcgacctcgaagtcctggtgaacacccgccagtccctggtcgccgaagagctcgacggtttcagccagctcggtggttccatccttgaata    <  2:500304‑M1/150‑147 (MQ=255)                                                                                                                                  ggCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCATGTGTCATCCCTGTACACAACGGCCTTTCAGCCGCGCGCGCCCtgt    >  2:512414/1‑150 (MQ=255)                                                                                                                                    tcgagcccgcagcgcagcgcacctgctcgctggccgagtacaaggccagcatcgtccgcgacctcgaagtcctggtgaacacccgccagtccctggtcgccgaagagctcgacggtttcagccagctcggtggttccatccttgaatacg  <  1:462927‑M1/149‑149 (MQ=255)                                                                                                                                     cAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCAt                                                 >  2:214142/1‑102 (MQ=255)                                                                                                                                     cAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCAt                                                 <  1:214142/102‑1 (MQ=255)                                                                                                                                     |                                                                                                                                                     GAAGTCCGGCATGCCGTATTCAAGGATGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCATGTGTCATCCCTGTACACAACGGCCTTTCAGCCGCGCGCGCCCTGTGG  >  NC_002947/3494494‑3494774

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.