New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3494626	27 (1.170)	3 (0.140)	3/238	NT	11.2%	coding (102/483 nt)	PP_3098	hypothetical protein
	?	NC_002947	= 3494655	22 (1.000)					coding (73/483 nt)	PP_3098	hypothetical protein

CGTATTCAAGGATGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCATGTGTCATCCCTGTACACAACGGCCTTTCAGCCGCGCGCGCCCTGTGGCAGCTCGGCAACCAGCCGCAGCGAGGCGGT  >  NC_002947/3494508‑3494804                                                                                                                                                    |                                                                                                                                                      cGTATTCAAGGATGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCga                                                                                                                                                     <  1:462927‑M2/150‑3 (MQ=255)   tATTCAAGGATGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCggcc                                                                                                                                                   <  2:500304‑M2/150‑5 (MQ=255)           gATGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTa                                                                                                                                           <  2:599624/150‑1 (MQ=255)            aTGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAg                                                                                                                                          <  1:39372/150‑1 (MQ=255)             tGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAgg                                                                                                                                         <  2:60311/150‑1 (MQ=255)                  ccaccGAGCTGGCTGAAACCGTCGAGCTCTTCGCCGAGCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGa                                                                                                                                    >  1:357397/1‑150 (MQ=255)                   caccGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCGCGGCCGACTGGTAGGGACGAt                                                                                                                                   >  1:465144/1‑150 (MQ=255)                               tgAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAgtc                                                                                                                       >  1:25530/1‑150 (MQ=255)                               ggAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTTGTAGGGACGATCGTCCAGCAgtc                                                                                                                       <  2:161460/149‑1 (MQ=255)                                           gCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGa                                                                                                                                       <  2:600484/122‑1 (MQ=255)                                           gCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGa                                                                                                                                       >  1:600484/1‑122 (MQ=255)                                            ctctTCGGCGACCAGGGACTGGCGAGTCGGCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGa                                                                                                          <  1:403116/150‑1 (MQ=255)                                                                ggCGGGTGTTCACCAGGACTTCGAGGGCGCGGACGATGCTGGTCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGCCCCGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGt                                                                                      <  2:71811/150‑1 (MQ=255)                                                                  cGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTa                                                                                    <  1:500304/150‑1 (MQ=255)                                                                           aCCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCATgtgt                                                                           >  1:315129/1‑150 (MQ=255)                                                                            ccAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCATGTGTc                                                                          >  1:507074/1‑150 (MQ=255)                                                                                                       tGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATGGTCCAGCCGTCGGTCGAGCAGCGAGGTCAGGAGGCGGGGCTGGTTACTCGTGTGTCATCCCTGTAGACAACGGCCCTTCAGcc                                               >  2:284071/1‑150 (MQ=255)                                                                                                              gTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCggccgagtacaaggccagcatcgtccgcgacctcgaagtcctggtgaacacccgccagtccctggtcgccgaagagctcgacggtttcagccagctcggtggttccatcct                                        <  1:83155‑M2/150‑112 (MQ=255)                                                                                                                  tCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCggccgagtacaaggccagcatcgtccgcgacctcgaagtcctggtgaacacccgcca                                                                                              >  2:133211‑M2/1‑35 (MQ=255)                                                                                                                  tCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCggccgagtacaaggccagcatcgtccgcgacctcgaagtcctggtgaacacccgcca                                                                                              <  1:133211‑M2/92‑58 (MQ=255)                                                                                                                  tCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCATGTGTCATCCCTGTACACAACGGCCTTTCAGCCGCGCGCGCCCt                                    >  1:470859/1‑150 (MQ=255)                                                                                                                    ggCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCATGTGTCATCCCTGTACACAACGGCCTTTCAGCCGCGCGCGCCCtgt                                  >  2:512414/1‑150 (MQ=255)                                                                                                                       cAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCAt                                                                               >  2:214142/1‑102 (MQ=255)                                                                                                                       cAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCAt                                                                               <  1:214142/102‑1 (MQ=255)                                                                                                                                 gTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGAGCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCATGTGTCATCCCTGTACACAATGGCCTTTCAGCCGCGCGCGCCCTGTGGCAGCTCggtgg                     <  2:357397/150‑4 (MQ=255)                                                                                                                                       taaacggcgGGCTCGTCCGACTGGTAGGGACGCTCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGGGGGCCTGGTTACTCATGTGTCATCCCTGTACACAACGGCCTTTCAGCCGCGCGCGCCCTGTGGCAGCTCCGCAACCAGcc               >  2:154530/7‑150 (MQ=255)                                                                                                                                          gctgcgGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCATGTGTCATCCCTGTACACAACGGCCTTTCAGCCGCGCGCGCCCTGTGGCAGCTCGGCAACCAGCCGCa            <  2:507074/150‑1 (MQ=255)                                                                                                                                                   tCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCATGTGTCATCCCTGTACACAACGGCCTTTCAGCCGCGCGCGCCCTGTGGCAGCTCGGCAACCAGCCGCAGCGAGGCgg   >  1:448143/1‑150 (MQ=255)                                                                                                                                                    cGGCCGACTGGTAGGGACGATCGTACAGCAATCATTAGTGTAGCGAGGGCAGCAGGCGGGCCTGGTTACTCATGTGTCATCCCTGTACACAACGGCCTTTCAGCCGCGCGCGCCCTGTGGCAGCTCGGCAACCAGCCGCAGCGAGGCGGt  <  2:315129/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CGTATTCAAGGATGGAACCACCGAGCTGGCTGAAACCGTCGAGCTCTTCGGCGACCAGGGACTGGCGGGTGTTCACCAGGACTTCGAGGTCGCGGACGATGCTGGCCTTGTACTCGGCCAGCGAGCAGGTGCGCTGCGCTGCGGGCTCGGCCGACTGGTAGGGACGATCGTCCAGCAGTCGGTCGAGCAGCGAGGGCAGCAGGCGGGCCTGGTTACTCATGTGTCATCCCTGTACACAACGGCCTTTCAGCCGCGCGCGCCCTGTGGCAGCTCGGCAACCAGCCGCAGCGAGGCGGT  >  NC_002947/3494508‑3494804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.