New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4667658 =	38 (1.640)	4 (0.180)	4/242	NT	10.7%	coding (1378/1854 nt)	nuoL	NADH‑quinone oxidoreductase subunit L
	?	NC_002947	4667708 =	30 (1.340)					coding (1428/1854 nt)	nuoL	NADH‑quinone oxidoreductase subunit L

CAGCGGCAACACCGGCCTGCTGTATGCCGGCCTGGTAGGCGCGTTCATGACCTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTGCCATCG  >  NC_002947/4667510‑4667790                                                                                                                                                     |                                                                                                                                     gacggcgctgacgaagcggcgcttgcccaggaacagcagggcggccatcaggataccggcgatggcgatggcacccgaggtgatctccagcgcgtgcttggcttcgccaccggcatggccggcgctttccggcagcacaccggccagcgg                                                                                                                                     <  1:354128‑M1/2‑1 (MQ=255)   gCGGCAACACCGGCCTGCTGTATGCCGGCCTGGTAGGCGCGTTCATGACCTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCg                                                                                                                                   >  2:566845/1‑150 (MQ=255)      gCAACACCGGCCTGCTGTATGCCGGCCTGGTAGGCGCGTTCATGACCTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGc                                                                                                                                <  2:124103/150‑1 (MQ=255)          cacCGGCCTGCTGTATGCCGGCCTGGTAGGCGCGTTCATGACCTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGAt                                                                                                                            >  1:108963/1‑150 (MQ=255)             cGGCCTGCTGTATGCCGGCCTGGTAGGCGCGTTCATGACCTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGt                                                                                                                         >  2:406229/1‑150 (MQ=255)                          cccaggaacagcagggcggccagcaggataccggcgatggcgatggcacccgaggtgatctccagcgcgtgcttggcttcgccaccggcatggccggcgctttccggcagcacaccggccagcGGCGTGCTGATCGTGCTGTCGACTTtc                                                                                                            <  2:33549‑M1/27‑1 (MQ=255)                            cGGCCTGGTAGGCGCGTTCATGACCTCGCTGTACACCTTCCGCCGGATCTTCATCGCCTTCCACGGCGAAGCCAAGACGGAAGCCCAAGTTGGCTACAGCATCAGCCACTGGCTGAAGCTGGGCGTGCTGAACGTACTATCCGCTTtcgt                                                                                                          >  2:60406/1‑150 (MQ=255)                             ggCCAGGTAGTCGCGTTCATGACCTCTCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTtcgtc                                                                                                         <  2:496853/150‑1 (MQ=255)                              gCCTGGTAGGCGCGTTCATGACCTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTtcgtcg                                                                                                        >  2:342541/1‑150 (MQ=255)                                  ggTAGGCGCGTTCATGACCTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGgcgc                                                                                                    <  1:566845/150‑1 (MQ=255)                                       gcgcGTTCATGACCTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGa                                                                                               >  2:520615/1‑150 (MQ=255)                                        cgcgTTCATGACCTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGAt                                                                                              >  1:336365/1‑150 (MQ=255)                                              cagcaggataccggcgatggcgatggcacccgaggtgatctccagcgcgtgcttggcttcgccaccggcatggccggcgctttccggcagcacaccggccagcGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCAcccc                                                                                        >  1:33549‑M1/104‑150 (MQ=255)                                                tGACCTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCccgc                                                                                      <  1:284180/150‑1 (MQ=255)                                                    cTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCt                                                                                  <  1:549233/150‑1 (MQ=255)                                                     tCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCACGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGAGCGTGATGGTCGTGATGTCGACGTTCCTCGTCGCCTGGATCACCCCGCCGCTg                                                                                 <  1:539429/150‑1 (MQ=255)                                                             cacCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTtcgtc                                                                                                         <  2:453543/118‑1 (MQ=255)                                                             cacCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTtcgtc                                                                                                         >  1:453543/1‑118 (MQ=255)                                                                cTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGtgct                                                                      <  2:336365/150‑1 (MQ=255)                                                                    cGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCg                                                                  <  1:560702/150‑1 (MQ=255)                                                                        tGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGaaa                                                              <  1:130945/150‑1 (MQ=255)                                                                        tGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGaaa                                                              <  1:406229/150‑1 (MQ=255)                                                                               cATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCgg                                                       >  1:339338/1‑150 (MQ=255)                                                                                aTCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGc                                                      >  1:298463/1‑150 (MQ=255)                                                                                        cagcgcgtgcttggcttcgccaccggcatggccggcgctttccggcagcacaccggccagcGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGAt                                                                                              <  2:613321‑M1/41‑1 (MQ=255)                                                                                        cagcgcgtgcttggcttcgccaccggcatggccggcgctttccggcagcacaccggccagcGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGAt                                                                                              >  1:613321‑M1/62‑102 (MQ=255)                                                                                          aCGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTg                                            <  1:342541/150‑1 (MQ=255)                                                                                                  gCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGcc                                    <  2:339338/150‑1 (MQ=255)                                                                                                    cAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCaa                                  >  2:595585/1‑150 (MQ=255)                                                                                                     aaGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGAt                                                                                              <  2:372867/89‑1 (MQ=255)                                                                                                     aaGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGAt                                                                                              >  1:372867/1‑89 (MQ=255)                                                                                                      aGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGAGTTTCGTCGGCGCATGGATCACCCCACCACTGGCCGGTGTGCTGCCGGAAAGAGCTGGCCATGCCGGTTGAGAAGGCAAgg                                >  1:28841/1‑149 (MQ=255)                                                                                                                        gCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCt              >  1:591178/1‑150 (MQ=255)                                                                                                                         ccACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTc             >  1:399901/1‑150 (MQ=255)                                                                                                                          cACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCg            >  2:354128/1‑150 (MQ=255)                                                                                                                               cATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTgc       >  2:174539/1‑150 (MQ=255)                                                                                                                                aTCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGcc                                                         >  1:51081/1‑99 (MQ=255)                                                                                                                                aTCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGcc                                                         <  2:51081/99‑1 (MQ=255)                                                                                                                                    gCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTgccatcg  >  1:223231/1‑150 (MQ=255)                                                                                                                                    gCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTgccatcg  <  1:60406/150‑1 (MQ=255)                                                                                                                                           gCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGga                      <  1:458541/123‑1 (MQ=255)                                                                                                                                           gCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGga                      >  2:458541/1‑123 (MQ=255)                                                                                                                                             tGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCaa                                  <  2:189286/109‑1 (MQ=255)                                                                                                                                             tGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCaa                                  >  1:189286/1‑109 (MQ=255)                                                                                                                                                     |                                                                                                                                     CAGCGGCAACACCGGCCTGCTGTATGCCGGCCTGGTAGGCGCGTTCATGACCTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTGCCATCG  >  NC_002947/4667510‑4667790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.