New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4667658 =	38 (1.640)	4 (0.180)	4/242	NT	10.7%	coding (1378/1854 nt)	nuoL	NADH‑quinone oxidoreductase subunit L
	?	NC_002947	4667708 =	30 (1.340)					coding (1428/1854 nt)	nuoL	NADH‑quinone oxidoreductase subunit L

CTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTGCCATCGCCATCGCCGGTATCCTGCTGGCCGCCCTGCTGTTCCTGGGCAAGCGCCGCTTCGTCAGCGCCGTC  >  NC_002947/4667561‑4667855                                                                                                                                                    |                                                                                                                                                    cTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCt                                                                                                                                                   <  1:549233/150‑1 (MQ=255)  tCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCACGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGAGCGTGATGGTCGTGATGTCGACGTTCCTCGTCGCCTGGATCACCCCGCCGCTg                                                                                                                                                  <  1:539429/150‑1 (MQ=255)             cTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGtgct                                                                                                                                       <  2:336365/150‑1 (MQ=255)                 cGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCg                                                                                                                                   <  1:560702/150‑1 (MQ=255)                     tGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGaaa                                                                                                                               <  1:130945/150‑1 (MQ=255)                     tGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGaaa                                                                                                                               <  1:406229/150‑1 (MQ=255)                            cATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCgg                                                                                                                        >  1:339338/1‑150 (MQ=255)                             aTCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGc                                                                                                                       >  1:298463/1‑150 (MQ=255)                                       aCGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTg                                                                                                             <  1:342541/150‑1 (MQ=255)                                               gCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGcc                                                                                                     <  2:339338/150‑1 (MQ=255)                                                 cAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCaa                                                                                                   >  2:595585/1‑150 (MQ=255)                                                   aGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGAGTTTCGTCGGCGCATGGATCACCCCACCACTGGCCGGTGTGCTGCCGGAAAGAGCTGGCCATGCCGGTTGAGAAGGCAAgg                                                                                                 >  1:28841/1‑149 (MQ=255)                                                                     gCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCt                                                                               >  1:591178/1‑150 (MQ=255)                                                                      ccACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTc                                                                              >  1:399901/1‑150 (MQ=255)                                                                       cACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCg                                                                             >  2:354128/1‑150 (MQ=255)                                                                            cATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTgc                                                                        >  2:174539/1‑150 (MQ=255)                                                                             aTCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGcc                                                                                                                          >  1:51081/1‑99 (MQ=255)                                                                             aTCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGcc                                                                                                                          <  2:51081/99‑1 (MQ=255)                                                                                 gCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTgccatcg                                                                   <  1:60406/150‑1 (MQ=255)                                                                                 gCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTgccatcg                                                                   >  1:223231/1‑150 (MQ=255)                                                                                        gCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGga                                                                                       <  1:458541/123‑1 (MQ=255)                                                                                        gCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGga                                                                                       >  2:458541/1‑123 (MQ=255)                                                                                          tGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCaa                                                                                                   <  2:189286/109‑1 (MQ=255)                                                                                          tGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCaa                                                                                                   >  1:189286/1‑109 (MQ=255)                                                                                                    gGTGCTGACCGGGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTGCCATCGCCATCGCCGGTATCctgct                                                >  2:223231‑M1/2‑150 (MQ=255)                                                                                                    CGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTGCCATCGCCATCGCCGGTATCctgct                                                >  1:595585‑M1/1‑150 (MQ=255)                                                                                                     ggggtgatccaggcgccgacgaaagtcgacagcacgatcagcacgccGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTGCCATCGCCATCGCCGGTATCctgctg                                               >  1:33549‑M2/48‑150 (MQ=255)                                                                                                           atccaggcgccgacgaaagtcgacagcacgatcagcacgccGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTg                                                                                         >  1:613321‑M2/42‑102 (MQ=255)                                                                                                           atccaggcgccgacgaaagtcgacagcacgatcagcacgccGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTg                                                                                         <  2:613321‑M2/61‑1 (MQ=255)                                                                                                                    tCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTGCCATCGCCATCGCCGGTATCCTGCTGGCCGCCCTGCTGTTc                                >  1:98111/1‑150 (MQ=255)                                                                                                                       aCTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGgt                                                                                                                                            <  1:556261/39‑1 (MQ=255)                                                                                                                       aCTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGgt                                                                                                                                            >  2:556261/1‑39 (MQ=255)                                                                                                                        cTTTCGTCGGCGCCTGGCCCACCCCGCCTCTCGCCGGTGCGCTTCCTGCCCGCGCCGGCCACTCCCGTGGCGACGCCAAGCACGCGCTGGAGAGCACCTCCGGTGCCATCGCCATCGCCGGTATCCTGCTGGCCCCCCTCCTTTTCCttg                            <  2:28841/150‑3 (MQ=255)                                                                                                                         tttCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTgcca                                                                      <  2:453225/107‑1 (MQ=255)                                                                                                                         tttCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTgcca                                                                      >  1:453225/1‑107 (MQ=255)                                                                                                                         gaaagtcgacagcacgatcagcacgccGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTGCCATCGCCATCGCCGGTATCCTGCTGGCCGCCCTGCTGTTCCTggg                           <  2:33549‑M2/123‑1 (MQ=255)                                                                                                                                ggCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGTCATGCCGGTGGCGAAGCCAAGCACGAGCTGGAGATCACCTCGGGTGCCATCGCCATCGCCGGTATCCTGCTGGCCGCCCTGCTGTTCCTGGGCAAgcgc                    <  2:108963/150‑1 (MQ=255)                                                                                                                                     cTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTGCCATCGCCATCGCCGGTATCCTGCTGGCCGCCCTGCTGTTCCTGGGCAAGCGCCGCtt               >  2:99978/1‑150 (MQ=255)                                                                                                                                                  ccGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTGCCATCGCCATCGCCGGTATCCTGATGGCCGCCCTGCTGTTCCTGGGCAAGCGCCGCTTCGTCAGCGCCGTc  <  1:354128‑M2/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CTCGCTGTACACCTTCCGCCTGATCTTCATCGCCTTCCACGGCGAAGCCAAGACCGAAGCCCACGCTGGCCACGGCATCAGCCACTGGCTGCCGCTGGGCGTGCTGATCGTGCTGTCGACTTTCGTCGGCGCCTGGATCACCCCGCCGCTGGCCGGTGTGCTGCCGGAAAGCGCCGGCCATGCCGGTGGCGAAGCCAAGCACGCGCTGGAGATCACCTCGGGTGCCATCGCCATCGCCGGTATCCTGCTGGCCGCCCTGCTGTTCCTGGGCAAGCGCCGCTTCGTCAGCGCCGTC  >  NC_002947/4667561‑4667855

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.