New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1263652 =	25 (1.080)	4 (0.180)	4/242	NT	15.3%	coding (761/1659 nt)	PP_1105	ATP‑dependent DNA ligase
	?	NC_002947	1263688 =	20 (0.890)					coding (725/1659 nt)	PP_1105	ATP‑dependent DNA ligase

CACGGCCAGTTCCGTCTCGGTTTCACCGGGTTTCCAGACCAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAGGGCTGA  >  NC_002947/1263504‑1263792                                                                                                                                                     |                                                                                                                                             cACGGCCAGTTCCGTCTCGGTTTCACCGGGTTTCCAGACCAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAAACAGTTCTTCGACGCGTGACCACACCCTCAGCTg                                                                                                                                             <  2:38739/150‑1 (MQ=255)  aCGGCCAGTTCCGTCTCGGTTTCACCGGGTTTCCAGACCAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCCGGCCATGCTGTTCGGGGAATCGCTCGGTAACTTGTTTTTCGCCGCGTGGCCACACCCACAGCTgg                                                                                                                                            <  2:226678/150‑1 (MQ=255)  aCGGCCAGTTCCGTCTCGGTTTCACCGGGTTTCCAGACCAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTgg                                                                                                                                            >  1:297852/1‑150 (MQ=255)          ttCCGTCTCGGTTTCACCGGGTTTCCAGACCAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATcgcg                                                                                                                                    >  1:318216/1‑150 (MQ=255)               tctcGGTTTCACCGGGTTTCCAGACCAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTca                                                                                                                               <  1:316801/150‑1 (MQ=255)                  gccgatgaacacaaccagcgtggcggtcagccctacccattcttcctggcccatccgctgcaagtgtccagcgatcagttcgataccctgctcggaccaccaagcgattggcaaatcgaatggaagtgggaTGGCCATCGCGCTTcacca                                                                                                                            <  1:519550‑M1/19‑1 (MQ=255)                     gatctccGGGTTTCCAGACCGAGCTCTGGTCTTCGATCACCGCTCCATCTGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACtt                                                                                                                         <  2:375750/145‑1 (MQ=255)                           cGGGTTTCCAGACCAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTgagatc                                                                                                                   >  1:375750/1‑145 (MQ=255)                                   cAGACCAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCa                                                                                                           >  1:1828/1‑150 (MQ=255)                                    cgtggcggtcagccctacccattcttcctggcccatccgctgcaagtgtccagcgatcagttcgataccctgctcggaccaccaagcgattggcaaatcgaatggaagtgggaTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCAt                                                                                                          >  2:519550‑M1/114‑150 (MQ=255)                                    aGACCAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCAt                                                                                                          >  1:338299/1‑150 (MQ=255)                                      aCCAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATcc                                                                                                        <  2:297852/150‑1 (MQ=255)                                        cAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACAACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCa                                                                                                      >  1:113498/1‑150 (MQ=255)                                                  ctacccattcttcctggcccatccgctgcaagtgtccagcgatcagttcgataccctgctcggaccaccaagcgattggcaaatcgaatggaagtgggaTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCAc                                                                                                     >  1:440985‑M1/100‑141 (MQ=255)                                                  ctacccattcttcctggcccatccgctgcaagtgtccagcgatcagttcgataccctgctcggaccaccaagcgattggcaaatcgaatggaagtgggaTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCAc                                                                                                     <  2:440985‑M1/42‑1 (MQ=255)                                                  ccATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATcg                                                                                                                                      <  2:118315/108‑1 (MQ=255)                                                  ccATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATcg                                                                                                                                      >  1:118315/1‑108 (MQ=255)                                                    aTCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGAt                                                                                          <  2:318216/150‑1 (MQ=255)                                                      cGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGAttt                                                                                        >  1:152251/1‑150 (MQ=255)                                                         gCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCgcgc                                                                                                                                   <  1:266849/104‑1 (MQ=255)                                                         gCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCgcgc                                                                                                                                   >  2:266849/1‑104 (MQ=255)                                                                        gCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTc                                                                      >  2:505837/1‑150 (MQ=255)                                                                                          cATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACt                                                    <  2:1828/150‑1 (MQ=255)                                                                                          cATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACt                                                    >  2:310941/1‑150 (MQ=255)                                                                                                           cgcTCGGTAACTTGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCCATTATGCCCGGGTGCGATCCGCTTTCCATTCGATTTGCCACTCGCTTGGTGGTCCGAGCAGTGTATCGAACTGATCGCTGGACACTTGc                                   <  1:505837/150‑1 (MQ=255)                                                                                                                 gTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGa                             >  1:409956/1‑150 (MQ=255)                                                                                                                    aCCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATgg                          <  1:310941/150‑1 (MQ=255)                                                                                                                      cAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGc                        <  2:409956/150‑1 (MQ=255)                                                                                                                               gccgcGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTg                                            <  2:365623/121‑1 (MQ=255)                                                                                                                               gccgcGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTg                                            >  1:365623/1‑121 (MQ=255)                                                                                                                                 cgcgTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATg             <  1:411002/150‑1 (MQ=255)                                                                                                                                            acCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAGGGCTGa  >  2:28322/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                             CACGGCCAGTTCCGTCTCGGTTTCACCGGGTTTCCAGACCAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAGGGCTGA  >  NC_002947/1263504‑1263792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.