New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1968086	14 (0.610)	4 (0.190)	4/224	NT	22.5%	intergenic (‑54/+104)	yciK/gph	putative oxidoreductase/phosphoglycolate phosphatase
	?	NC_002947	= 1968145	15 (0.720)					intergenic (‑113/+45)	yciK/gph	putative oxidoreductase/phosphoglycolate phosphatase

CTTGGCAGCCGCGGCACCAATGCCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGTCCGATCAGGCGCCAGGGTTGTCCGGGCTGGCGCATTCGCGGGTGAACCCGCTCCTACAAAAGGGCGGTGCCCGGTCATCGGTCTGGGTTCAGCACCCGCACAGCGCGCTGTCGATCACTTTGCGCAGT  >  NC_002947/1967940‑1968229                                                                                                                                                   |                                                                                                                                                cTTGGCAGCCGCGGCACCAATGCCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTAc                                                                                                                                              >  2:342638/1‑150 (MQ=255) cTTGGCAGCCGCGGCACCAATGCCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTAc                                                                                                                                              >  1:135511/1‑150 (MQ=255) cTTGGCAGCCGCGGCACCAATGCCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTAc                                                                                                                                              <  2:355927/150‑1 (MQ=255)   tGGCAGCCGCGGCACCAATGCCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTAccc                                                                                                                                            >  2:485237/1‑150 (MQ=255)         ccGCGGCACCAATGCCACGGCCGGCACCGGTAACCAGTATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTCGCACCTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAAt                                                                                                                                      >  1:499932/1‑150 (MQ=255)           gccgccccAATGGCACGGCCGGCACCGGTAACCAGGAGGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGc                                                                                                                                    <  2:343736/144‑1 (MQ=255)               cACCAATGCCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGTcc                                                                                                                                <  2:135511/150‑1 (MQ=255)                       ccACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTcacccgcgaatgcgccagcccggac                                                                                                                        >  2:558660‑M1/1‑125 (MQ=255)                            gccggcACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGTCCGATCAGGCGCCAg                                                                                                                   <  1:342638/150‑1 (MQ=255)                                  aCCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGTCCGATCAGGCGCCAGGGTTGt                                                                                                             >  1:1183/1‑150 (MQ=255)                                            aGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTTGTGTGTGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGTCCGATCAGGCGCCAGGGTTGTCCGGGCTGgc                                                                                                   <  1:107271/150‑1 (MQ=255)                                                                aaggCCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGTCCGATCAGGCGCCAGGGTTGTCCGGGCTGGCGCATTCGCGGGTGaacccgc                                                                               >  2:470201‑M2/2‑143 (MQ=255)                                                                         gcgggcggTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTcacccgcgaatgcgccagcccggacaaccctggcgcctgatcggacgcattcgcgg                                                                                         >  1:232376‑M1/1‑75 (MQ=255)                                                                         gcgggcggTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTcacccgcgaatgcgccagcccggacaaccctggcgcctgatcggacgcattcgcgg                                                                                         <  2:232376‑M1/131‑57 (MQ=255)                                                                           gggcggTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTcacccgcgaatgcgccagcccggacaaccctggcgcctgatcggacgcattcgcgggtaaacccgctcctacgatag                                                                    <  1:558660‑M1/150‑78 (MQ=255)                                                                              cggTGTAGTCGAACATGGTTCTGTCCTTCGGGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGGAAATGCGTCCGATCAGGCGTGTTGACTGCCCCGACGATCTCATTCGCGGGTGAACCCGCTCCTACAAAAGGGc                                                                 <  1:262054/150‑1 (MQ=255)                                                                               ggTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGTCCGATCAGGCGCCAGGGTTGTCCGGGCTGGCGCATTCGCGGGTGAACCCGCTCCTACAAAAGGGCg                                                                <  1:485237/150‑1 (MQ=255)                                                                                                 tCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGTCCGATCAGGCGCCAGGGTTGTCCGGGCTGGCGCATTCGCGGGTGAACCCGCTCCTACAAAAGGGCGGTGCCCGGTCATCGGTCt                                              >  1:154260/1‑150 (MQ=255)                                                                                                           gAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGTCCGATCAGGCGCCAGGGTTGTCCGGGCTGGCGCATTCGCGGGTGAACCCGCTCCTACAAAAGGGCGGTGCCCGGTCATCGGTCTGGGTTCAGCa                                    >  2:114324/1‑150 (MQ=255)                                                                                                                       gcggcCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGTCCGATCAGGCGCCAGGGTTGTCCGGGCTGGCGCATTCGCGGGTGAACCCGCTCCTACAAAAGGGCGGTGCCCGGTCATCGGTCTGGGTTCAGCACCCGCACAgcgc                        >  2:456236/1‑150 (MQ=255)                                                                                                                               ggCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGTCCGATCAGGCGCCAGGGTTGTCCGGGCTGGCGCATTCGCGGGTGAACCCGCTCCTACAAAAGGGCGGTGCCCGGTCATCGGTCTGGGTTCAGCACCCGCACAGCGCGCTGTCGa                <  2:392123/150‑1 (MQ=255)                                                                                                                                  cTATCGTAGGAGCGGGTTTACCCGCGAATGCGTCCGATCAGGCGCCAGGGTTGTCCGGGCTGGCGCATTCGCGGGTGaacccgctcctacgataggcccaggccgcccacacgaactcgaaggacagaaccatgttcgactacaccgccc             <  1:558660‑M2/150‑74 (MQ=255)                                                                                                                                    aTCGTAGGAGCGGGTTTACCCGCGAATGCGTCCGATCAGGCGCCAGGGTTGTCCGGGCTGGCGCATTCGCGGGTGAACCCGCTCCTACAAAAGGGCGGTGCCCGGTCATCGGTCTGGGTTCAGCACCCGCACAGCGCGCTGTCGATCACt           >  1:487775/1‑150 (MQ=255)                                                                                                                                        tAGGAGCGGGTTTACCCGCGAATGCGTCCGATCAGGCGCCAGGGTTGTCCGGGCTGGCGCATTCGCGGGTGaac                                                                                   >  1:584268‑M2/1‑71 (MQ=255)                                                                                                                                        tAGGAGCGGGTTTACCCGCGAATGCGTCCGATCAGGCGCCAGGGTTGTCCGGGCTGGCGCATTCGCGGGTGaac                                                                                   <  2:584268‑M2/74‑4 (MQ=255)                                                                                                                                        tAGGAGCGGGTTTACCCGCGAATGCGTCCGATCAGACGCCAGGGTTGTCCGGGCTGGCGCATTCGCGGGTGAACCCGCTCCTACAAAAGGGCGGCGCCCGGTCATCGGTCTGTGTTCAGCACCCGCACAGCGCGCTGTCGATCACTTTgc       >  2:17712/1‑150 (MQ=255)                                                                                                                                             gCGGGTTcacccgcgaatgcgccagcccggacaaccctggcgcctgatcggacgcattcgcgggtaaacccgctcctacgataggcccaggccgcccacacgaactcgaaggacagaaccatgttcgactacaccgcccgccccggcctt  >  2:470201‑M1/1‑7 (MQ=255)                                                                                                                                               gggTTTACCCGCGAATGCGTCCGATCAGGCGCCAGGGTTGTCCGGGCTGGCGCATTCGCGGGTGAACCCGCTCCTACAAAAGGGCGGTGCCCGGTCATCGGTCTGGGtt                                         >  2:295819/1‑109 (MQ=255)                                                                                                                                               gggTTTACCCGCGAATGCGTCCGATCAGGCGCCAGGGTTGTCCGGGCTGGCGCATTCGCGGGTGAACCCGCTCCTACAAAAGGGCGGTGCCCGGTCATCGGTCTGGGtt                                         <  1:295819/109‑1 (MQ=255)                                                                                                                                                 gTTcacccgcgaatgcgccagcccggacaaccctggcgcctgatcggacgcattcgcgggtaaacccgctccta                                                                          >  1:584268‑M1/1‑3 (MQ=255)                                                                                                                                                 gTTcacccgcgaatgcgccagcccggacaaccctggcgcctgatcggacgcattcgcgggtaaacccgctccta                                                                          <  2:584268‑M1/74‑72 (MQ=255)                                                                                                                                                   |                                                                                                                                                CTTGGCAGCCGCGGCACCAATGCCACGGCCGGCACCGGTAACCAGGATGACCCGGCCTTGCAGCAGGTCGGGGCGGGCGGTGTAGTCGAACATGGTTCTGTCCTTCGAGTTCGTGTGGGCGGCCTGGGCCTATCGTAGGAGCGGGTTTACCCGCGAATGCGTCCGATCAGGCGCCAGGGTTGTCCGGGCTGGCGCATTCGCGGGTGAACCCGCTCCTACAAAAGGGCGGTGCCCGGTCATCGGTCTGGGTTCAGCACCCGCACAGCGCGCTGTCGATCACTTTGCGCAGT  >  NC_002947/1967940‑1968229

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.