New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5306259 =18 (0.780)3 (0.130) 3/242 NT 14.1% coding (1041/3483 nt) recC multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit
?NC_002947 5306292 = 19 (0.850)coding (1008/3483 nt) recC multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit

GTCTTTTGTGGTGTCGACTGCCGGCCACCGTTCGCGGCTCTCGGCGAGCGGGCGCAATTCCAGGATGTCGTCCTGCAGTTCGTTGAGCAGCGTGGTGGGCGAACCGTCGCTGAACAGGTCGATGCGGCCGTCGCTGAACACGCCCTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTGGGCATGCTGGTGCAGCGTCTGGTCGTCCAGTTGCAGGGGCATGCCTTGCTTGCGTTGCTGGCGTTT  >  NC_002947/5306145‑5306438
                                                                                                                                                   |                                                                                                                                                  
caactggactaccagacgctgcaccagcatgcccacccgttgctggcagcctggggtaaacaaggccgcgactacatcgacctgctcgacagctatgatgacccaggcagctacCAGGTCGATGCGGCCGTCGCTGAACACGCCCTGGTa                                                                                                                                                  >  2:20583‑M1/115‑150 (MQ=255)
   ttttGTGGTGTCGACTGCCGGCCACCGTTCGCGGCTCTCGGCGAGCGGGCGCAATTCCAGGATGTCGTCCTGCAGTTCGTTGAGCAGCGTGGTGGGCGAACCGTCGCTGAACAGGTCGATGCGGCCGTCGCTGAACACGCCCTGGTAGCt                                                                                                                                               >  2:142817/1‑150 (MQ=255)
                    ccGGCCACCGTTCGCGGCTCTCGGCGAGCGGGCGCAATTCCAGGATGTCGTCCTGCAGTTCGTTGAGCAGCGTGGTGGGCGAACCGTCGCTGAACAGGTCGATGCGGCCGTCGCTGAACACGCCCTGGTAGCTGCCTGGGTCATCATAGc                                                                                                                              <  1:160745/150‑1 (MQ=255)
                         cACCGTTCGCGGCTCTCGGCGAGCGGGCGCAATTCCAGGATGTCGTCCTGCAGTTCGTTGAGCAGCGTGGTGGGCGAACCGTCGCTGAACAGGTCGATGCGGCCGTCGCTGAACACGCCCTGGTAGCTGCCTGGGTCATCATAGCTGTCg                                                                                                                         >  2:564386/1‑150 (MQ=255)
                          aCCGTTCGCGGCTCTCGGCGAGCGGGCGCAATTCCAGGATGTCGTCCTGCAGTTCGTTGAGCAGCGTGGTGGGCGAACCGTCGCTGAACAGGTCGATGCGGCCGTCGCTGAACACGCACTGGTAGCTGCCTGGGTCGGTGTAGCTGTCGa                                                                                                                        >  2:113581/1‑150 (MQ=255)
                                   ggCTCTCGGCGAGCGGGCGCAATTCCAGGATGTCGTACTGCAGTTCGTTGAGCAGCGTGGTGGGCGAACTGTCGCTGAACAGGTCGATGCGGCGGTCGCTGAACAGGCACTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGa                                                                                                               >  2:225184/1‑150 (MQ=255)
                                     ctctCGGCGAGCGGGCGCAATTCCAGGATGTCGTCCTGCAGTTCGTTGAGCAGCGTGGTGGGCGAACCGTCGCTGAACAGGTCGATGCGGCCGTCGCTGAACACGCCCTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATg                                                                                                             <  1:290383/150‑1 (MQ=255)
                                                   gcgcAATTCCAGGATGTCGTCCTGCAGTTCGTTGAGCAGCGTGGTGGGCGAACCGTCGCTGAACAGGTCGATGCGGCCGTCGCTGAACACGCCCTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTg                                                                                               >  1:592868/1‑150 (MQ=255)
                                                     gcAATTCCAGGATGTCGTCCTGCAGTTCGTTGAGCAGCGTGGTGGGCGAACCGTCGCTGAACAGGTCGATGCGGCCGTCGCTGAACACGCCCTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGtt                                                                                             <  1:121816/150‑1 (MQ=255)
                                                                     gtcCTGCAGTTCGTTGAGCAGCGTGGTGGGCGAACCGTCGCTGAACAGGTCGATGCGGCCGTCGCTGAACACGCCCTGGTAGCTGcc                                                                                                                                            <  2:518932/87‑1 (MQ=255)
                                                                     gtcCTGCAGTTCGTTGAGCAGCGTGGTGGGCGAACCGTCGCTGAACAGGTCGATGCGGCCGTCGCTGAACACGCCCTGGTAGCTGcc                                                                                                                                            >  1:518932/1‑87 (MQ=255)
                                                                        cTGCAGTTCGTTGAGCAGCGTGGTGGGCGAACCGTCGCTGAACAGGTCGATGCGGCCGTCGCTGAACACGCCCTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCaa                                                                          >  1:213069/1‑150 (MQ=255)
                                                                                      gcagcGTGGTGGGCGAACCGTCGCTGAACAGGTCGATGCGGCCGTCGCTGAACACGCCCTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCGAGCAACGGGGGGGCATGCt                                                            >  2:102996/1‑150 (MQ=255)
                                                                                           gtggtgGGCGAACCGTCGCTGAACAGGTCGATGCGGCCGTGGCTGAACACGCCCTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTGGGCATGCTGGTGc                                                       >  1:586400/1‑150 (MQ=255)
                                                                                                      acggTCACTGAACAGGCCGATGCGGCCGTCGCTGAACACGCCCTGGTAGCTTCCTGGTTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAAGCTGCCAGCAACGGGTGGGCATGCTGGTGCAGCGTCTGgtc                                            <  1:223417/147‑1 (MQ=255)
                                                                                                          tCGCTGAACAGGTCGATGCGGCCGTCGCTGAACACGCCCTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTGGGCATGCTGGTGCAGCGTCTGGTCGTcc                                        <  1:142817/150‑1 (MQ=255)
                                                                                                               taccagggcgtgttcagcgacggccgcatcgacctgGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTCGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTGGGCATGCTGGTGCAGCGTCTGGTAGTCCAGTTg                                   >  2:20583‑M2/37‑150 (MQ=255)
                                                                                                                  cagggcgtgttcagcgacggccgcatcgacctgGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTgg                                                                   >  1:565319‑M2/34‑115 (MQ=255)
                                                                                                                  cagggcgtgttcagcgacggccgcatcgacctgGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTgg                                                                   <  2:565319‑M2/82‑1 (MQ=255)
                                                                                                                                  tCGCTGAACACGCCCTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTGGGCATGCTGGTGCAGCGTCTGGTCGTCCAGTTGCAGGGGCATGCcttgcttg                >  1:231202/1‑150 (MQ=255)
                                                                                                                                        aaCACGCCCTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTGGGCATGCTGGTGCAGCGTCTGGTCGTCCAGTTGCAGGGGCATGCCTTGCTTGCGTTGc          <  1:102996/150‑1 (MQ=255)
                                                                                                                                        aaCACGCCCTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTGGGCATGCTGGTGCAGCGTCTGGTCGTCCAGTTGCAGGGGCATGCCTTGCTTGCGTTGc          <  2:586400/150‑1 (MQ=255)
                                                                                                                                         acacGCCCTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTCCCCCATGCTGCCAGCAACGGGTGGGCATGCTGGTGCAGCGTCCGCTCGTCCAGTTGCAGGGGCATGCCTTGCTTGCGTTGCt         <  1:49960/150‑1 (MQ=255)
                                                                                                                                                ctgGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTGGGCATGCTGGTGCAGCGTCTGGTCGTCCAGTTGCAGGGGCATGCCTTGCTTGCGTTGCTGGCGttt  <  1:366156‑M2/147‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
GTCTTTTGTGGTGTCGACTGCCGGCCACCGTTCGCGGCTCTCGGCGAGCGGGCGCAATTCCAGGATGTCGTCCTGCAGTTCGTTGAGCAGCGTGGTGGGCGAACCGTCGCTGAACAGGTCGATGCGGCCGTCGCTGAACACGCCCTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTGGGCATGCTGGTGCAGCGTCTGGTCGTCCAGTTGCAGGGGCATGCCTTGCTTGCGTTGCTGGCGTTT  >  NC_002947/5306145‑5306438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.