New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 26802	11 (0.470)	7 (0.320)	5/240	NT	38.5%	coding (922/924 nt)	PP_0021	hypothetical protein
	?	NC_002947	= 26806	12 (0.550)					intergenic (+2/+183)	PP_0021/PP_0022	hypothetical protein/hypothetical protein

GAGCTTGAGCACATTCACAAGGAAGTCATCAAATTCGATTCGGCTTGGTTCGAATCCCTTATCCGGATGCCGGTTGATCATCCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/26649‑26802 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcctCCTCAGGCCTGAGTCAGCTCCAGCAGATCGCCCAGTTCCTCCCGGGCCATCTTCACTCTATCCATTCTGCGATAAGGATGATCAACCGGCATCCGGATAAGGGATTCGAACCAAGCCGAATCGAATTTGA  <  NC_002947/26806‑26677                                                                                                                                                                                                                                                                                              GAGCTTGAGCACATTCACAAGGAAGTCATCAAATTCGATTCGGCTTGGTTCGAATCCCTTATCCGGATGCCGGTTGATCATCCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGAGATCTGCTGGAGCTGACTCAG                                                                                                                                        >  2:315936/1‑150   GCTTGAGCACATTCACAAGGAAGTCATCAAATTCGATTCGGCTTGGTTCGAATCCCTTATCCGGATGCCGGTTGATCATCCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGC                                                                                                                                      <  1:315936/150‑1              TTCACAGGGAAGTCATCAAATTCGATTCGGCTTGGTTCGAATCCCTTATCCGGATGCCGGTTGATCATCCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTCCTCAGGCC                                                                                                                           >  1:331840/1‑150                 acagGGAAGTCATCAAATTCGATTCGGCTTGGTTCGAATCCCTTATCCGGATGCCGGTTGATCATCCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTCCTCAGGCCTGA                                                                                                                        <  2:331840/146‑1                 ACAAGGAAGTCATCAAATTCGATTCGGCTTGGTTCGAATCCCTTATCCGGATGCCGGTTGATCATCCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTCCTCAGGCCTGA                                                                                                                        <  1:413795/150‑1                                                                                                                          AACTGGGCGATCTGCTGGAGCTGACTCAGGCCTGAGGAGGCCTGAGTCCGCTCCAGCAGATCGCCCAGTTCCTCCCGGGCCACCTTCCCTCTATCCATTCTGCTATAAGGATGCTCAACCGGCCTCCCGACAATGGATTCGAACCAATCC               >  2:292554/1‑150                                                                                                                                    TCTGCTGGAGCTGACTCAGGCCTCCTCAGGCCTGA                                                                                                                        >  1:466942/1‑35                                                                                                                                    TCTGCTGGAGCTGACTCAGGCCTCCTCAGGCCTGA                                                                                                                        <  2:466942/35‑1                                                                                                                                       GCTGGAGCTGACTCAGGCCTGCGGAGGCCTGAGTCAGCTCCAGCAGATCGCCCAGTTCCTCCCGGGCCATCTTCACTCTATCCATTCTGCGATAAGGATGATCAACCGGCATCCGGATAAGGGATTCGAACCAAGCCGAATCGAATTTGA  <  1:292554/150‑1                                                                                                                                                          TCCTCAGGCCTGAGTCAGCTCCAGCAGATCGCCCAGTTCCTCCCGGGCCATCTTCACTCTATCCATTCTGCGATAAGGAT                                                     >  1:557521/1‑80                                                                                                                                                          TCCTCAGGCCTGAGTCAGCTCCAGCAGATCGCCCAGTTCCTCCCGGGCCATCTTCACTCTATCCATTCTGCGATAAGGAT                                                     <  2:557521/80‑1                                                                                                                                                                                                                                                                                              GAGCTTGAGCACATTCACAAGGAAGTCATCAAATTCGATTCGGCTTGGTTCGAATCCCTTATCCGGATGCCGGTTGATCATCCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/26649‑26802 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcctCCTCAGGCCTGAGTCAGCTCCAGCAGATCGCCCAGTTCCTCCCGGGCCATCTTCACTCTATCCATTCTGCGATAAGGATGATCAACCGGCATCCGGATAAGGGATTCGAACCAAGCCGAATCGAATTTGA  <  NC_002947/26806‑26677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.