| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 26802 | 11 (0.470) | 7 (0.320) | 5/240 | NT | 38.5% | coding (922/924 nt) | PP_0021 | hypothetical protein |
| ? | NC_002947 | = 26806 | 12 (0.550) | intergenic (+2/+183) | PP_0021/PP_0022 | hypothetical protein/hypothetical protein | |||||
TTCACAAGGAAGTCATCAAATTCGATTCGGCTTGGTTCGAATCCCTTATCCGGATGCCGGTTGATCATCCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTGAGGAGGCCTGTTGTAAACCACTTTTTTTCACTGTAACCACAGTGGTTTACAGTGAAAAAAAGTGGTTTACAACGTAGCTACGACACGCGCCCTGGCCACTCCCCAGGCCAGCGCGCTCCTCATTGATTCGTTCAGTCGGGCGTCGA > NC_002947/26662‑26949 | ttCACAGGGAAGTCATCAAATTCGATTCGGCTTGGTTCGAATCCCTTATCCGGATGCCGGTTGATCATCCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTcctcaggcc > 1:331840‑M1/1‑141 (MQ=255) acagggaagtCATCAAATTCGATTCGGCTTGGTTCGAATCCCTTATCCGGATGCCGGTTGATCATCCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTcctcaggcctga < 2:331840‑M1/146‑13 (MQ=255) acaAGGAAGTCATCAAATTCGATTCGGCTTGGTTCGAATCCCTTATCCGGATGCCGGTTGATCATCCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTcctcaggcctga < 1:413795‑M1/150‑13 (MQ=255) tcaAATTCGATTCGGCTTGGTTCGAATCCCTTATCCGGATGCCGGTTGATCATCCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTGAGGAGGCCTGTTGTAAACCACtt > 1:252174/1‑150 (MQ=255) tcaAATTCGATTCGGCTTGGTTCGAATCCCTTATCCGGATGCCGGTTGATCATCCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTCCGCaggcctgagtcagctccagc < 1:292554‑M2/150‑21 (MQ=255) ggATTGGTTCGAATCCATTGTCGGGAGGCCGGTTGAGCATCCTTATAGCAGAATGGATAGAGGGAAGGTGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCGGACTCAGGCCTCCTCaggcctgagtcagctccagcagatcgcccagtt > 2:292554‑M2/1‑117 (MQ=255) ttCGAATCCCTTATCCGGATGCCGGTTGATCATCCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTGAGGAGGCCTGTTGTAAACCACTTTTTTTCACTGTAACCACAGt > 1:269208/1‑150 (MQ=255) ccTTATCCGGATGCCGGTTGATCATCCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTGAGGAGGCCTGTTGTAAACCACTTTTTTTCACTGTAACCACAGTGGTTTACa < 2:217650/150‑1 (MQ=255) tcatcCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTGAGGAGGCCTGTTGTAAACCACTTTTTTTCACTGTAACCACAGTGGTTTACAGTGAAAAAAAGTGGTTTACaa > 2:546752/1‑150 (MQ=255) atcCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTGAGGa > 1:557521‑M2/1‑79 (MQ=255) atcCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTGAGGa < 2:557521‑M2/80‑2 (MQ=255) atcCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTGAGGAGGCCTGTTGTAAACCACTTTTTTTCACTGGAACCACAGTGGTTTACAGTGAAAAAGAGTGGTTTACAACg > 1:365533/1‑150 (MQ=255) ggaTCGCAGGATGGATAGAGTGAAGAGGGCTCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTGAGGAGGCCTGTTGTAAACCACTTTTTTTCACTGTAACCACAGTGGTTTACAGTGAAAAAAAGTGGTTTACAACGTAGc < 2:252174/148‑1 (MQ=255) gCAGAATGGAGAGAGTGAAGATGGCGCGGGAGGAACGGGGCGATCTGTTGTAGCGGACTCAGGCCGGAGGAGGCCTGTTGTAAACCACTTTTTTTCACTGTAACCACAGTGGTTTACAGTGAAAAAAAGTGGTTTCCAACGTAGCTACGa > 2:179309/1‑150 (MQ=38) gagTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTGAGGAGGCCTGTTGTAAACCACTTTTTTTCACTGTAACCACAGTGGTTTACAGTGAAAAAAAGTGGTTTACAACGTAGCTACGACACGCGCCCTgg < 1:237950/150‑1 (MQ=255) ggaACTGGGCGATCTGCTGGAGCTGACTCAGGCCTGAGGAGGCCTGTTGTAAACCACTTTTTTTCACTGTAACCACAGTGGTTTACAGTGAAAAAAAGTGGTTTACAACGTAGCTACGACACGCGCCCTGGCCACTCCCCAGGCCAgcgc > 1:1857/1‑150 (MQ=255) aaCTGGGCGATCTGCTGGAGCTGACTCAGGCCTgaggaggcctgagtccgctccagcagatcgcccagttcctcccgggccaccttccctctatccattctgctataaggatgctcaaccggcctcccgacaatggattcgaaccaatcc > 2:292554‑M1/1‑33 (MQ=255) tCTGCTGGAGCTGACTCAGGCCTcctcaggcctga < 2:466942‑M1/35‑13 (MQ=255) tCTGCTGGAGCTGACTCAGGCCTcctcaggcctga > 1:466942‑M1/1‑23 (MQ=255) gctgGAGCTGACTCAGGCCTgcggaggcctgagtcagctccagcagatcgcccagttcctcccgggccatcttcactctatccattctgcgataaggatgatcaaccggcatccggataagggattcgaaccaagccgaatcgaatttga < 1:292554‑M1/150‑131 (MQ=255) ggAGCTGACTCAGGCCTGAGGAGGCCTGTTGTAAACCACTTTTTTTCACTGTAACCACAGTGGTTTACAGTGAAAAAAAGTGGTTTACAACGTAGCTACGACACGCGCCCTGGCCACTCCCCAGGCCAGCGCGCTCCTCATTGATTCGtt < 2:1857/150‑1 (MQ=255) aCTCAGGCCTGAGGAGGCCTGTTGTAAACCACTTTTTTTCACTGTAACCACAGTGGTTTACAGTGAAAAAAAGTGGTTTACAACGTAGCTACGACACGCGCCCTGGCCACTCCCCAGGCCAGCGCGCTCCTCATTGATTCGTTCAGTCgg < 1:546752/150‑1 (MQ=255) tCAGGCCTGAGGaggcctgagtcagctccagcagatcgcccagttcctcccgggccatcttcactctatccattctgcgataaggatgatcaaccggcatccggataagggattcgaaccaagccgaatcgaatttgatgacttccttgt < 1:413795‑M2/150‑139 (MQ=255) tCAGGCCTGAGGaggcctgagtcagctccagcagatcgcccagttcctcccgggccatcttcactctatccattctgcgataaggatgatcaaccggcatccggataagggattcgaaccaagccgaatcgaatttgatgacttccctgt < 2:331840‑M2/150‑139 (MQ=255) tCAGGCCTGAGGaggcctgagtcagctccagcaga > 1:466942‑M2/1‑12 (MQ=255) tCAGGCCTGAGGaggcctgagtcagctccagcaga < 2:466942‑M2/35‑24 (MQ=255) ggCCTGAGGaggcctgagtcagctccagcagatcgcccagttcctcccgggccatcttcactctatccattctgcgataaggatgatcaaccggcatccggataagggattcgaaccaagccgaatcgaatttgatgacttccctgtgaa > 1:331840‑M2/1‑9 (MQ=255) ccTGAGGAGGCCTGTTGTAAACCACTTTTTTTCACTGTAACCACAGTGGTTTACAGTGAAAAAAAGTGGTTTACAACGTAGCTACGACACGCGCCCTGGCCACTCCCCAGGCCAGCGCGCTCCTCATTGATTCGTTCAGTCGGGCGTCGa > 2:144078/1‑150 (MQ=255) tcctcaggcctgagtcagctccagcagatcgcccagttcctcccgggccatcttcactctatccattctgcgataaggat > 1:557521‑M1/1‑1 (MQ=255) tcctcaggcctgagtcagctccagcagatcgcccagttcctcccgggccatcttcactctatccattctgcgataaggat < 2:557521‑M1/80‑80 (MQ=255) | TTCACAAGGAAGTCATCAAATTCGATTCGGCTTGGTTCGAATCCCTTATCCGGATGCCGGTTGATCATCCTTATCGCAGAATGGATAGAGTGAAGATGGCCCGGGAGGAACTGGGCGATCTGCTGGAGCTGACTCAGGCCTGAGGAGGCCTGTTGTAAACCACTTTTTTTCACTGTAACCACAGTGGTTTACAGTGAAAAAAAGTGGTTTACAACGTAGCTACGACACGCGCCCTGGCCACTCCCCAGGCCAGCGCGCTCCTCATTGATTCGTTCAGTCGGGCGTCGA > NC_002947/26662‑26949 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |