New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 328970	23 (0.990)	3 (0.140)	3/238	NT	12.1%	coding (282/1368 nt)	PP_0270	sensor histidine kinase
	?	NC_002947	= 328998	22 (1.010)					coding (254/1368 nt)	PP_0270	sensor histidine kinase

CGCCAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/328854‑328970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcctgCGCAAGAGCATGACGAGCGCCGCGGGCACAGGCGGGTCGAGCTGTTGTTGCAGCAGGCCCTGAAGTACGAGCTGGGGCATGCCCAGGACGTACGCCTGATGCACGTGCAACTCACCGACGAGCTGGGCCAGCCGATCGTCTGG  <  NC_002947/328998‑328856                                                                                                                                                                                                                                                                      CGCCAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGC                                                                                                                <  1:597789/150‑1                                                                                  TTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGCGGGTCGAGCTGTTGT                                                                                                 >  1:519399/1‑84                                                                                  TTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGCGGGTCGAGCTGTTGT                                                                                                 <  2:519399/84‑1                                                                                                              CCCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGCGGGTCGAGCTGTTGTTGCAGCAGGCCCTGAAGTACGAGCTGGGGCATGCTCAGGACGTACGCCTGATCCACTTGGAAGTCACCGACGAGCTGGGCCAGCCGATCGTCTG   <  2:70692/150‑1                                                                                                               CCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGCGGGTCGAGCTGTTGTTGCAGCAGGCCCTGAAGTACGAGCTGGGGCATGCCCAGGACGTACGGCTGATGCACGTGCAACTCACCGACGAGCTGGGCCAGCCGATCGTCTGG  >  2:411022/1‑150                                                                                                               CCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGCGGGTCGAGCTGTTGTTGCAGCAGGCCCTGAAGTACGAGCTGGGGCATGCCCAGGACGTACGCCTGATGCACGTGCAACTCACCGACGAGCTGGGCCAGCCGATCGTCTGG  >  1:84774/1‑150                                                                                                               CCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGCGGGTCGAGCTGTTGTTGCAGCAGGCCCTGAAGTACGAGCTGGGGCATGCCCAGGACGTACGCCTGATGCACGTGCAACTCACCGACGAGCTGGGCCAGCCGATCGTCTGG  >  2:383270/1‑150                                                                                                                                                                                                                                                                      CGCCAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/328854‑328970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcctgCGCAAGAGCATGACGAGCGCCGCGGGCACAGGCGGGTCGAGCTGTTGTTGCAGCAGGCCCTGAAGTACGAGCTGGGGCATGCCCAGGACGTACGCCTGATGCACGTGCAACTCACCGACGAGCTGGGCCAGCCGATCGTCTGG  <  NC_002947/328998‑328856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.