New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 328970	23 (0.990)	3 (0.140)	3/238	NT	12.1%	coding (282/1368 nt)	PP_0270	sensor histidine kinase
	?	NC_002947	= 328998	22 (1.010)					coding (254/1368 nt)	PP_0270	sensor histidine kinase

CCAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGC‑‑AGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGGCACCTCTAGCGCCTGAGCGAAACGCACGTCGAA  >  NC_002947/328856‑329146                                                                                                                                               |                                                                                                                                                       ccAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGcaggcgg                                                                                                                                                 >  2:383270‑M2/1‑143 (MQ=255) ccAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGcaggcgg                                                                                                                                                 >  1:84774‑M2/1‑143 (MQ=255) ccAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGCCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGcaggcgg                                                                                                                                                 >  2:411022‑M2/1‑143 (MQ=255)  cAGACGATCGGCTGGCCCAGCTCGTCGGTGACTTCCAAGTGGATCAGGCGTACGTCCTGAGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGcaggcggg                                                                                                                                                <  2:70692‑M2/150‑9 (MQ=255)         tCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGa                                                                                                                                         <  2:397858/150‑1 (MQ=255)             cTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCa                                                                                                                                     <  1:366544/150‑1 (MQ=255)                gcgcAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTg                                                                                                                                  >  2:176226/4‑150 (MQ=255)                    aGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCACCAGCAGCTCGACCCGCCTGTGCCCGCGGCGCTGGTGATGCTCGTTCGCAGGCGGGCTTTCGACGCAGTGAAGc                                                                                                                              <  2:376546/150‑1 (MQ=255)                                  ttGCACGTGCATCAGGCGTACGTCATGGCAAGGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTgg                                                                                                                >  1:172353/1‑150 (MQ=255)                                                   gTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTAccgc                                                                                               >  1:235070/1‑150 (MQ=255)                                                     aCGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTAccgccg                                                                                             >  2:310597/1‑150 (MQ=255)                                                         ccTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGc                                                                                         >  2:353983/1‑150 (MQ=255)                                                                     ccAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCttt                                                                                                                                            <  2:531438/87‑1 (MQ=255)                                                                     ccAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCttt                                                                                                                                            >  1:531438/1‑87 (MQ=255)                                                                     ccAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGC‑‑AGTCGGCCTggg                                                                           >  2:497325/1‑150 (MQ=255)                                                                            gTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGC‑‑AGTCGGCCTGGGCAATCAg                                                                    >  2:480457/1‑150 (MQ=255)                                                                             tACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGC‑‑AGTCGGCCTGGGCAATCAgg                                                                   <  1:353983/150‑1 (MQ=255)                                                                                           ctgcAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATTCGCGTGCGCAGGCGGGTTATCCACACAGTGAGACCGGTAGTGGGCTGGCTCCTGCAACGTACCGCCGGGGC‑‑GGTTGGCCTGGGCAGTCCGCTGGGCCCTGCGTga                                                     >  2:241518/1‑149 (MQ=255)                                                                                            tgcAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGC‑‑AGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTgca                                                    <  1:132109/150‑1 (MQ=255)                                                                                            tgcAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGC‑‑AGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTgca                                                    <  1:176226/150‑1 (MQ=255)                                                                                                acaacaGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGcaggcgggtcgagctgttgttgcagcaggccctgaa                                                                                                                    <  2:519399‑M2/84‑37 (MQ=255)                                                                                                acaacaGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGcaggcgggtcgagctgttgttgcagcaggccctgaa                                                                                                                    >  1:519399‑M2/1‑48 (MQ=255)                                                                                                   acaGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGC‑‑AGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCa                                             >  2:371058/1‑150 (MQ=255)                                                                                                      gCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGC‑‑AGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTc                                          <  1:310597/150‑1 (MQ=255)                                                                                                       cTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGC‑‑AGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCg                                         >  2:22721/1‑150 (MQ=255)                                                                                                            cccGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGC‑‑AGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACgg                                    >  1:52531/1‑150 (MQ=255)                                                                                                               gCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGcaggcgggtcgagctgttgttgcagcaggccctgaagtacgagctggggcatgcccaggacgtacgcctgatgcacgtgcaactcaccgacgagctgggccagccgatcgtctggcg                                   <  1:597789‑M2/150‑118 (MQ=255)                                                                                                                       ccGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGC‑‑AGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGGCACCTCTAgc                         <  2:535394/150‑1 (MQ=255)                                                                                                                          cggcgCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGC‑‑AGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGGCACCTCTAGCGcc                      <  1:70692/150‑1 (MQ=255)                                                                                                                             cgcTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGC‑‑AGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGGCACCTCTAGCGCCTGa                   <  2:235070/150‑1 (MQ=255)                                                                                                                                        ctctTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGC‑‑AGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGGCACCTCTAGCGCCTGAGCGAAACGCAc        <  1:371058/150‑1 (MQ=255)                                                                                                                                              cgcAGGCGGGCTTTCGACGCAGTGAATCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCCAAGTGGG‑‑TGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGGCACCTCTAGCGCCTGAGCGAAACGCACGTCGaa  <  1:497325/150‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                       CCAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGC‑‑AGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGGCACCTCTAGCGCCTGAGCGAAACGCACGTCGAA  >  NC_002947/328856‑329146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.