New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 328970	23 (0.990)	3 (0.140)	3/238	NT	12.1%	coding (282/1368 nt)	PP_0270	sensor histidine kinase
	?	NC_002947	= 328998	22 (1.010)					coding (254/1368 nt)	PP_0270	sensor histidine kinase

GGGCCGTGCGCAGGCCGAACAGGCTGCGCCAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGGCA  >  NC_002947/328828‑329115                                                                                                                                               |                                                                                                                                                  gggCCGTGCGCAGGCCGAACAGGCTGCGCCAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTATGTCCTGGGCATGCCCCAGCTCGTCCTTCTGGGCCTGCTGCAACAACAGTTCGACCCGCCTGTGCCcgc                                                                                                                                            <  2:21594/150‑1 (MQ=255)    ccGTGCGCAGGCCGAACAGGCTGCGCCAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAAAACCAGCTCGACCCGCCTGTGCCCgcggc                                                                                                                                         <  2:164206/150‑1 (MQ=255)                     aGGCTGCGCCAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTgc                                                                                                                        <  1:355081/150‑1 (MQ=255)                           cgcCAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGcgcaagagcatgacgagcgccgcgggcacaggc                                                                                                                  <  1:597789‑M1/150‑34 (MQ=255)                             ccAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGcaggcgg                                                                                                                >  2:383270‑M2/1‑143 (MQ=255)                             ccAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGcaggcgg                                                                                                                >  1:84774‑M2/1‑143 (MQ=255)                             ccAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGCCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGcaggcgg                                                                                                                >  2:411022‑M2/1‑143 (MQ=255)                              cAGACGATCGGCTGGCCCAGCTCGTCGGTGACTTCCAAGTGGATCAGGCGTACGTCCTGAGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGcaggcggg                                                                                                               <  2:70692‑M2/150‑9 (MQ=255)                                     tCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGa                                                                                                        <  2:397858/150‑1 (MQ=255)                                         cTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCa                                                                                                    <  1:366544/150‑1 (MQ=255)                                            gcgcAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTg                                                                                                 >  2:176226/4‑150 (MQ=255)                                                aGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCACCAGCAGCTCGACCCGCCTGTGCCCGCGGCGCTGGTGATGCTCGTTCGCAGGCGGGCTTTCGACGCAGTGAAGc                                                                                             <  2:376546/150‑1 (MQ=255)                                                              ttGCACGTGCATCAGGCGTACGTCATGGCAAGGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTgg                                                                               >  1:172353/1‑150 (MQ=255)                                                                               gTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTAccgc                                                              >  1:235070/1‑150 (MQ=255)                                                                                 aCGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTAccgccg                                                            >  2:310597/1‑150 (MQ=255)                                                                                     ccTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGc                                                        >  2:353983/1‑150 (MQ=255)                                                                                                 ccAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCttt                                                                                                           <  2:531438/87‑1 (MQ=255)                                                                                                 ccAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCttt                                                                                                           >  1:531438/1‑87 (MQ=255)                                                                                                 ccAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTggg                                            >  2:497325/1‑150 (MQ=255)                                                                                                        gTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAg                                     >  2:480457/1‑150 (MQ=255)                                                                                                         tACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAgg                                    <  1:353983/150‑1 (MQ=255)                                                                                                            ttCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGcgcaagagcatgacgagcgccgcgggcacaggcgggtcgagctgttgt                                                                                                   >  1:519399‑M1/1‑36 (MQ=255)                                                                                                            ttCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGcgcaagagcatgacgagcgccgcgggcacaggcgggtcgagctgttgt                                                                                                   <  2:519399‑M1/84‑49 (MQ=255)                                                                                                                       ctgcAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATTCGCGTGCGCAGGCGGGTTATCCACACAGTGAGACCGGTAGTGGGCTGGCTCCTGCAACGTACCGCCGGGGCGGTTGGCCTGGGCAGTCCGCTGGGCCCTGCGTga                      >  2:241518/1‑149 (MQ=255)                                                                                                                        tgcAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTgca                     <  1:132109/150‑1 (MQ=255)                                                                                                                        tgcAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTgca                     <  1:176226/150‑1 (MQ=255)                                                                                                                            acaacaGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGcaggcgggtcgagctgttgttgcagcaggccctgaa                                                                                   <  2:519399‑M2/84‑37 (MQ=255)                                                                                                                            acaacaGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGcaggcgggtcgagctgttgttgcagcaggccctgaa                                                                                   >  1:519399‑M2/1‑48 (MQ=255)                                                                                                                               acaGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCa              >  2:371058/1‑150 (MQ=255)                                                                                                                                  gCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTc           <  1:310597/150‑1 (MQ=255)                                                                                                                                   cTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCg          >  2:22721/1‑150 (MQ=255)                                                                                                                                        cccGCCTGcgcaagagcatgacgagcgccgcgggcacaggcgggtcgagctgttgttgcagcaggccctgaagtacgagctggggcatgctcaggacgtacgcctgatccacttggaagtcaccgacgagctgggccagccgatcgtctg     <  2:70692‑M1/150‑143 (MQ=255)                                                                                                                                        cccGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACgg     >  1:52531/1‑150 (MQ=255)                                                                                                                                         ccGCCTGcgcaagagcatgacgagcgccgcgggcacaggcgggtcgagctgttgttgcagcaggccctgaagtacgagctggggcatgcccaggacgtacggctgatgcacgtgcaactcaccgacgagctgggccagccgatcgtctgg    >  2:411022‑M1/1‑7 (MQ=255)                                                                                                                                         ccGCCTGcgcaagagcatgacgagcgccgcgggcacaggcgggtcgagctgttgttgcagcaggccctgaagtacgagctggggcatgcccaggacgtacgcctgatgcacgtgcaactcaccgacgagctgggccagccgatcgtctgg    >  2:383270‑M1/1‑7 (MQ=255)                                                                                                                                         ccGCCTGcgcaagagcatgacgagcgccgcgggcacaggcgggtcgagctgttgttgcagcaggccctgaagtacgagctggggcatgcccaggacgtacgcctgatgcacgtgcaactcaccgacgagctgggccagccgatcgtctgg    >  1:84774‑M1/1‑7 (MQ=255)                                                                                                                                           gCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGcaggcgggtcgagctgttgttgcagcaggccctgaagtacgagctggggcatgcccaggacgtacgcctgatgcacgtgcaactcaccgacgagctgggccagccgatcgtctggcg  <  1:597789‑M2/150‑118 (MQ=255)                                                                                                                                               |                                                                                                                                                  GGGCCGTGCGCAGGCCGAACAGGCTGCGCCAGACGATCGGCTGGCCCAGCTCGTCGGTGAGTTGCACGTGCATCAGGCGTACGTCCTGGGCATGCCCCAGCTCGTACTTCAGGGCCTGCTGCAACAACAGCTCGACCCGCCTGTGCCCGCGGCGCTCGTCATGCTCTTGCGCAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGGCA  >  NC_002947/328828‑329115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.