New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 379592	27 (1.160)	3 (0.140)	3/240	NT	10.4%	intergenic (‑175/‑115)	gbcA/gbcB	glycine‑betaine dioxygenase subunit/glycine‑betaine dioxygenase subunit
	?	NC_002947	= 379602	26 (1.180)					intergenic (‑185/‑105)	gbcA/gbcB	glycine‑betaine dioxygenase subunit/glycine‑betaine dioxygenase subunit

TTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/379510‑379592 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagccc‑CGTGGCACAAGGGCTGGCGCGTCGTTATTCAAATCGGCCATGTCGCCCATGGATACGGTTCGCGGCGTCTTCGGACGCACACTCCACGGCAAAAGAACTAGCTGTTTTATCTGAAGCAGCCTTGCGGCACCACAACAACGATTAGCCAC  <  NC_002947/379602‑379454                                                                                                                                                                                                                                           TTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCC‑CGTGGCACAAGGGCTGGCGCGTC                                                                                                                                >  1:568545/1‑106 TTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCC‑CGTGGCACAAGGGCTGGCGCGTC                                                                                                                                <  2:568545/106‑1                                                         CCGATTTGAATAACGACGCGCCAGCCCTTGTGCCAC‑GGGGCTGGCGCGTCGTTATTCAAATCGGCCATGTCGCCCATGGATACGGTTCGCGGCGTCTTCGGACGCACACTCCACGGCAAAAGAACTAGCTGTTTTATCTGAAGCAGCCTT                            >  1:193447/1‑150                                                                              CAGCCC‑CGTGGCACAAGGGCTGGCGCGTCGTTATTCAAATCGGCCATGTCGCCCATGGATACGGTTCGCGGCGTCTTCGGACGCACACTCCACGGCAAAAGAACTAGCTGTTTTATCTGAAGCAGCCTTGCGGCACCACAACAACGATTA       <  2:476926/150‑1                                                                                   C‑CGTGGCACAAGGGCTGGCACGTCGTTATTCAAATCGGCCATGTCGCCCATGGATACGGTTCGCGGCGTCTTCGGACGCACACTCCACGGCAAAAGAACTAGCTGTTTTATCTGAAGCAGCCTTGCGGCACCACAACAACGATTAGCCAC  <  2:402417/150‑1                                                                                                                                                                                                                                           TTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/379510‑379592 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagccc‑CGTGGCACAAGGGCTGGCGCGTCGTTATTCAAATCGGCCATGTCGCCCATGGATACGGTTCGCGGCGTCTTCGGACGCACACTCCACGGCAAAAGAACTAGCTGTTTTATCTGAAGCAGCCTTGCGGCACCACAACAACGATTAGCCAC  <  NC_002947/379602‑379454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.