| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 379592 | 27 (1.160) | 3 (0.140) | 3/240 | NT | 10.4% | intergenic (‑175/‑115) | gbcA/gbcB | glycine‑betaine dioxygenase subunit/glycine‑betaine dioxygenase subunit |
| ? | NC_002947 | = 379602 | 26 (1.180) | intergenic (‑185/‑105) | gbcA/gbcB | glycine‑betaine dioxygenase subunit/glycine‑betaine dioxygenase subunit | |||||
GTGGCTAATCGTTGTTGTGGTGCCGCAAGGCTGCTTCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCAC > NC_002947/379454‑379741 | gTGGCTAATCGTTGTTGTGGTGCCGCAAGGCTGCTTCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGTGCCAGCCCTTGTGCCACGg < 2:402417‑M2/150‑2 (MQ=255) tAATCGTTGTTGTGGTGCCGCAAGGCTGCTTCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGgggctg < 2:476926‑M2/150‑7 (MQ=255) gCCGCAAGGCTGCTTCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGt > 1:296849/1‑150 (MQ=255) gCAAGGCTGCTTCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGa > 2:196681/1‑150 (MQ=255) gCAAGGCTGCTTCAGATAAAACAGCTAGTTCTTTTGCAGTGGAGTGTACGACAGCGGACCCTGGCTAGCGGACATTTGCTCGTTAGGGCCGATTTTAAGAACTACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGa < 2:376182/150‑1 (MQ=255) aaGGCTGCTTCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCC‑GTGGCACAagggctggcgcgtcgttattcaaatcgg > 1:193447‑M2/1‑122 (MQ=255) gctgctTCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGTCGACATGGCCGATTTGAATAACGACGCGCCATCCCTTGTGCCACGGGGCTGGTCGCGTTATACGTGTCGATGTCg > 1:280500/1‑150 (MQ=255) tCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCgcaggca < 2:419295/150‑1 (MQ=255) tCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCgcaggca < 2:36375/150‑1 (MQ=255) gATAAAACAGCTAGTTCTTTTGCCGTGGAATGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGACCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTGGATGTCGCAGGCAGGa > 1:149860/1‑150 (MQ=255) aCAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGc < 2:516288/101‑1 (MQ=255) aCAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGc > 1:516288/1‑101 (MQ=255) aCAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGTTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGc < 2:335229/150‑1 (MQ=255) aCAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGc < 1:343545/150‑1 (MQ=255) aCAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGc < 1:62014/150‑1 (MQ=255) gCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGcgtc < 1:192883/150‑1 (MQ=255) gCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGcgtc < 1:402417/150‑1 (MQ=255) cTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGcgtcg > 1:78664/1‑150 (MQ=255) tttGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCcgtggcacaagggctggcgcgtc > 1:568545‑M1/1‑83 (MQ=255) tttGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCcgtggcacaagggctggcgcgtc < 2:568545‑M1/106‑24 (MQ=255) tGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCtt < 1:476926/150‑1 (MQ=255) ccGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGcgtc > 1:428042/1‑137 (MQ=255) ccGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGcgtc < 2:428042/137‑1 (MQ=255) gTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGc < 2:320570/150‑1 (MQ=255) aaGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGa > 1:351216/1‑150 (MQ=255) cgcgAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGc > 1:405393/1‑82 (MQ=255) cgcgAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGc < 2:405393/82‑1 (MQ=255) cATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGc > 2:248032/1‑150 (MQ=255) ggCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCTCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGga < 1:196681/150‑1 (MQ=255) gCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGTAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACAt < 2:508887/150‑1 (MQ=255) ccGATTTGAATAACGACGCGCCAGCCCttgtgccacggggctggcgcgtcgttattcaaatcggccatgtcgcccatggatacggttcgcggcgtcttcggacgcacactccacggcaaaagaactagctgttttatctgaagcagcctt > 1:193447‑M1/1‑27 (MQ=255) aTAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATAcc < 2:351216/150‑1 (MQ=255) gacgCGCCAGCCCTTGTGCCACGgggctggcgcgtcgttattcaaatcggccatgtcgcccatggatacggttcgcggcgtcttcggacgcacactccacggcaaa > 1:568545‑M2/1‑23 (MQ=255) gacgCGCCAGCCCTTGTGCCACGgggctggcgcgtcgttattcaaatcggccatgtcgcccatggatacggttcgcggcgtcttcggacgcacactccacggcaaa < 2:568545‑M2/106‑84 (MQ=255) gcgcCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCaa > 1:28953/1‑150 (MQ=255) cAGCCCcgtggcacaagggctggcgcgtcgttattcaaatcggccatgtcgcccatggatacggttcgcggcgtcttcggacgcacactccacggcaaaagaactagctgttttatctgaagcagccttgcggcaccacaacaacgatta < 2:476926‑M1/150‑145 (MQ=255) aGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCgg < 2:78664/150‑1 (MQ=255) ccgtggcacaagggctggcacgtcgttattcaaatcggccatgtcgcccatggatacggttcgcggcgtcttcggacgcacactccacggcaaaagaactagctgttttatctgaagcagccttgcggcaccacaacaacgattagccac < 2:402417‑M1/150‑150 (MQ=255) | GTGGCTAATCGTTGTTGTGGTGCCGCAAGGCTGCTTCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCAC > NC_002947/379454‑379741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |