New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 379592	27 (1.160)	3 (0.140)	3/240	NT	10.4%	intergenic (‑175/‑115)	gbcA/gbcB	glycine‑betaine dioxygenase subunit/glycine‑betaine dioxygenase subunit
	?	NC_002947	= 379602	26 (1.180)					intergenic (‑185/‑105)	gbcA/gbcB	glycine‑betaine dioxygenase subunit/glycine‑betaine dioxygenase subunit

GTGGCTAATCGTTGTTGTGGTGCCGCAAGGCTGCTTCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGG  >  NC_002947/379454‑379737                                                                                                                                                     |                                                                                                                                        gTGGCTAATCGTTGTTGTGGTGCCGCAAGGCTGCTTCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGTGCCAGCCCTTGTGCCACGg                                                                                                                                        <  2:402417‑M2/150‑2 (MQ=255)      tAATCGTTGTTGTGGTGCCGCAAGGCTGCTTCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGgggctg                                                                                                                                   <  2:476926‑M2/150‑7 (MQ=255)                      gCCGCAAGGCTGCTTCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGt                                                                                                                   >  1:296849/1‑150 (MQ=255)                         gCAAGGCTGCTTCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGa                                                                                                                >  2:196681/1‑150 (MQ=255)                         gCAAGGCTGCTTCAGATAAAACAGCTAGTTCTTTTGCAGTGGAGTGTACGACAGCGGACCCTGGCTAGCGGACATTTGCTCGTTAGGGCCGATTTTAAGAACTACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGa                                                                                                                <  2:376182/150‑1 (MQ=255)                           aaGGCTGCTTCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCC‑GTGGCACAagggctggcgcgtcgttattcaaatcgg                                                                                                             >  1:193447‑M2/1‑122 (MQ=255)                              gctgctTCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGTCGACATGGCCGATTTGAATAACGACGCGCCATCCCTTGTGCCACGGGGCTGGTCGCGTTATACGTGTCGATGTCg                                                                                                           >  1:280500/1‑150 (MQ=255)                                    tCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCgcaggca                                                                                                     <  2:419295/150‑1 (MQ=255)                                    tCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCgcaggca                                                                                                     <  2:36375/150‑1 (MQ=255)                                       gATAAAACAGCTAGTTCTTTTGCCGTGGAATGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGACCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTGGATGTCGCAGGCAGGa                                                                                                  >  1:149860/1‑150 (MQ=255)                                             aCAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGTTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGc                                                                                            <  2:335229/150‑1 (MQ=255)                                             aCAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGc                                                                                            <  1:343545/150‑1 (MQ=255)                                             aCAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGc                                                                                            <  1:62014/150‑1 (MQ=255)                                                gCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGcgtc                                                                                         <  1:192883/150‑1 (MQ=255)                                                gCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGcgtc                                                                                         <  1:402417/150‑1 (MQ=255)                                                 cTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGcgtcg                                                                                        >  1:78664/1‑150 (MQ=255)                                                           tGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCtt                                                                              <  1:476926/150‑1 (MQ=255)                                                             ccGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGcgtc                                                                                         >  1:428042/1‑137 (MQ=255)                                                             ccGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGcgtc                                                                                         <  2:428042/137‑1 (MQ=255)                                                                          gTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGc                                                               <  2:320570/150‑1 (MQ=255)                                                                               aaGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGa                                                          >  1:351216/1‑150 (MQ=255)                                                                                      cgcgAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGc                                                                                                                       >  1:405393/1‑82 (MQ=255)                                                                                      cgcgAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGc                                                                                                                       <  2:405393/82‑1 (MQ=255)                                                                                                   cATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGc                                      >  2:248032/1‑150 (MQ=255)                                                                                                       ggCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCTCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGga                                  <  1:196681/150‑1 (MQ=255)                                                                                                                gCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGTAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACAt                         <  2:508887/150‑1 (MQ=255)                                                                                                                          aTAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATAcc               <  2:351216/150‑1 (MQ=255)                                                                                                                               gacgCGCCAGCCCTTGTGCCACGgggctggcgcgtcgttattcaaatcggccatgtcgcccatggatacggttcgcggcgtcttcggacgcacactccacggcaaa                                                      >  1:568545‑M2/1‑23 (MQ=255)                                                                                                                               gacgCGCCAGCCCTTGTGCCACGgggctggcgcgtcgttattcaaatcggccatgtcgcccatggatacggttcgcggcgtcttcggacgcacactccacggcaaa                                                      <  2:568545‑M2/106‑84 (MQ=255)                                                                                                                                  gcgcCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCaa       >  1:28953/1‑150 (MQ=255)                                                                                                                                       aGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCgg  <  2:78664/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                        GTGGCTAATCGTTGTTGTGGTGCCGCAAGGCTGCTTCAGATAAAACAGCTAGTTCTTTTGCCGTGGAGTGTGCGTCCGAAGACGCCGCGAACCGTATCCATGGGCGACATGGCCGATTTGAATAACGACGCGCCAGCCCTTGTGCCACGGGGCTGGTCGCGATAAGCACGTCGATGTCGCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGG  >  NC_002947/379454‑379737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.