New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2301803 = | 33 (1.420) | 3 (0.140) | 4/238 | NT | 9.9% | coding (74/654 nt) | PP_5497 | rhs repeat‑associated core domain‑containing protein |
? | NC_002947 | 2301828 = | 24 (1.100) | coding (99/654 nt) | PP_5497 | rhs repeat‑associated core domain‑containing protein |
AACAAAAGGCGTAGCTGTTCACCCCACCCTCACCAAACGGGCTGAAGCTGTCCGCCGACAGAAAGCGCATCAGAGCCGGGCTGAATGCACGATACCCGTTGCCCAATAGGTAACTCGTCAACTCAACGGCCAGCCGTTCGCCGTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2301949‑2301803 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgttgaGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTTCGAATGATCCTGTTAATCGGCAGGAT > NC_002947/2301828‑2301975 AACAAAAGGCGTAGCTGTTCACCCCACCCTCACCAAACGGGCTGAAGCTGTCCGCCGACAGAAAGCGCATCAGAGCCGGGCTGAATGCACGATACCCGTTGCCCAATAGGTAACTCGTCAACTCAACGGCGAACGGCTGGCCGTTGAGTT < 2:42513/150‑1 GTAGCTGTACGCCCCACCCTCACCAAACGGGCTGAAGCTGTCCGCCGATAGAAAGCGCATCAGAGCCGGGCTGAATGCACGATACCCGTTGCCCAATAGGTAACTCGTCAACTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTAC < 1:333177/150‑1 ACTCAACGGCCAGCCGTTCGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTC > 1:238813/1‑93 ACTCAACGGCCAGCCGTTCGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTC < 2:238813/93‑1 GAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTTCGAATGATCCTGTTAATCGGCAGGAT < 2:471807/150‑1 AACAAAAGGCGTAGCTGTTCACCCCACCCTCACCAAACGGGCTGAAGCTGTCCGCCGACAGAAAGCGCATCAGAGCCGGGCTGAATGCACGATACCCGTTGCCCAATAGGTAACTCGTCAACTCAACGGCCAGCCGTTCGCCGTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2301949‑2301803 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgttgaGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTTCGAATGATCCTGTTAATCGGCAGGAT > NC_002947/2301828‑2301975 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |