| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2301803 = | 33 (1.420) | 3 (0.140) | 4/238 | NT | 9.9% | coding (74/654 nt) | PP_5497 | rhs repeat‑associated core domain‑containing protein |
| ? | NC_002947 | 2301828 = | 24 (1.100) | coding (99/654 nt) | PP_5497 | rhs repeat‑associated core domain‑containing protein | |||||
TGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTT > NC_002947/2301655‑2301949 | atcctgccgattaacaggatcattcgaacaaaaggcgtagctgttcaccccaccctcaccaaacgggctgaagctgtccgccgacagaaagcgcatcagagccgggctgaatgcacgatacccgttgcccaataggtaactcgtcaactc < 2:471807‑M1/2‑1 (MQ=255) ttGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAAc < 1:488634/150‑1 (MQ=255) tGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACg < 1:538140/150‑1 (MQ=255) gATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACgg < 2:167002/150‑1 (MQ=255) cggcggAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGc < 1:208263/150‑1 (MQ=255) ggcggAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGcc > 1:493197/1‑150 (MQ=255) gAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCgttg > 1:88458/1‑150 (MQ=255) aaTTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCgttgagtt > 2:20455/1‑150 (MQ=255) tgtgTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGAc < 1:20455/150‑1 (MQ=255) tgtgTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATACAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGAc < 1:569656/150‑1 (MQ=255) tgtTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGa > 2:213907/1‑150 (MQ=255) cGAACAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCAATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTa < 1:47807/150‑1 (MQ=255) tACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTggg < 2:40978/150‑1 (MQ=255) tACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTggg > 1:586758/1‑150 (MQ=255) tGGCTCACTTGTATGAGGCTAGGCGATGGCGACATTGGCACAGGGCTATACAGCATACGGGTACTCCAAGCGGCAATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACgg < 1:196722/150‑1 (MQ=255) aCTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTAAACGACAAACGGGTTACCGAGTTGGGGACGGGTTACCTATTGGGCAACGGGTATCg > 1:499769/1‑150 (MQ=255) cTTGTATTAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGt < 2:493197/150‑1 (MQ=255) cTTGTATGAGGCTAGGCGATGGAGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGt < 1:241174/150‑1 (MQ=255) ggCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGAt < 1:213907/150‑1 (MQ=255) gacagaaagcgcatcagagccgggctgaatgcacgatacccgttgcccaataggtaactcgtcaacTCAACGGCGAACGGCTGGCCgttgagt > 1:238813‑M1/67‑93 (MQ=255) gacagaaagcgcatcagagccgggctgaatgcacgatacccgttgcccaataggtaactcgtcaacTCAACGGCGAACGGCTGGCCgttgagt < 2:238813‑M1/27‑1 (MQ=255) acaGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACg < 1:495030/65‑1 (MQ=255) acaGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACg > 2:495030/1‑65 (MQ=255) taCAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGCAAAGGAACTAAGTTGGCAACGGGTATCGTGAACTACACACCGCTCTGATGCGCTTTCTTTCGGCGGACAg > 1:319011/1‑150 (MQ=255) taCAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGAt > 1:507662/1‑129 (MQ=255) taCAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGAt < 2:507662/129‑1 (MQ=255) taCAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAg > 1:397264/1‑150 (MQ=255) taCAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAg > 2:230/1‑150 (MQ=255) aGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACg < 1:393474/98‑1 (MQ=255) aGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACg > 2:393474/1‑98 (MQ=255) aGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCAtt < 2:149784/111‑1 (MQ=255) aGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCAtt > 1:149784/1‑111 (MQ=255) tACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGttt > 1:508807/1‑150 (MQ=255) aCTCCAAGCGGCCATCGAAAAGCAAGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTg < 1:230/150‑1 (MQ=255) tCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTCCACCGCCAAAAACATAGCCGTGTATTTGACGAGGTAACTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCTGGGGACAGCTTCAGCCCGTTTGGt > 1:471807/1‑150 (MQ=255) aGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGc < 2:508807/150‑1 (MQ=255) gtaactcgtcaacTCAACGGCCAGCCGTTCGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTATCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGCGTACAGCTAc < 1:333177‑M1/137‑1 (MQ=255) aacTCAACGGCCAGCCGTTCGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGtt < 2:42513‑M1/147‑1 (MQ=255) | TGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTT > NC_002947/2301655‑2301949 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |