New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2301803 =	33 (1.420)	3 (0.140)	4/238	NT	9.9%	coding (74/654 nt)	PP_5497	rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2301828 =	24 (1.100)					coding (99/654 nt)	PP_5497	rhs repeat‑associated core domain‑containing protein

AATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTTCGAATGATCCTGTTAATCGGCAGGAT  >  NC_002947/2301681‑2301975                                                                                                                                                    |                                                                                                                                                    aacaaaaggcgtagctgttcaccccaccctcaccaaacgggctgaagctgtccgccgacagaaagcgcatcagagccgggctgaatgcacgatacccgttgcccaataggtaactcgtcaactcaacggcgaacggctggccgttgagtt                                                                                                                                                   <  2:42513‑M2/3‑1 (MQ=255) aaTTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCgttgagtt                                                                                                                                                   >  2:20455/1‑150 (MQ=255)    tgtgTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGAc                                                                                                                                                <  1:20455/150‑1 (MQ=255)    tgtgTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATACAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGAc                                                                                                                                                <  1:569656/150‑1 (MQ=255)      tgtTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGa                                                                                                                                              >  2:213907/1‑150 (MQ=255)          cGAACAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCAATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTa                                                                                                                                          <  1:47807/150‑1 (MQ=255)           gtagctgtacgccccaccctcaccaaacgggctgaagctgtccgccgatagaaagcgcatcagagccgggctgaatgcacgatacccgttgcccaataggtaactcgtcaactcaacggcgaacggctggccgttgaGTTGACGAGTTAc                                                                                                                                         <  1:333177‑M2/13‑1 (MQ=255)                   tACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTggg                                                                                                                                 >  1:586758/1‑150 (MQ=255)                   tACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTggg                                                                                                                                 <  2:40978/150‑1 (MQ=255)                         tGGCTCACTTGTATGAGGCTAGGCGATGGCGACATTGGCACAGGGCTATACAGCATACGGGTACTCCAAGCGGCAATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACgg                                                                                                                           <  1:196722/150‑1 (MQ=255)                               aCTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTAAACGACAAACGGGTTACCGAGTTGGGGACGGGTTACCTATTGGGCAACGGGTATCg                                                                                                                     >  1:499769/1‑150 (MQ=255)                                cTTGTATTAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGt                                                                                                                    <  2:493197/150‑1 (MQ=255)                                cTTGTATGAGGCTAGGCGATGGAGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGt                                                                                                                    <  1:241174/150‑1 (MQ=255)                                                    ggCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGAt                                                                                                <  1:213907/150‑1 (MQ=255)                                                         gacagaaagcgcatcagagccgggctgaatgcacgatacccgttgcccaataggtaactcgtcaacTCAACGGCGAACGGCTGGCCgttgagt                                                                                                                                                    >  1:238813‑M1/67‑93 (MQ=255)                                                         gacagaaagcgcatcagagccgggctgaatgcacgatacccgttgcccaataggtaactcgtcaacTCAACGGCGAACGGCTGGCCgttgagt                                                                                                                                                    <  2:238813‑M1/27‑1 (MQ=255)                                                                         taCAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGCAAAGGAACTAAGTTGGCAACGGGTATCGTGAACTACACACCGCTCTGATGCGCTTTCTTTCGGCGGACAg                                                                           >  1:319011/1‑150 (MQ=255)                                                                         taCAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGAt                                                                                                >  1:507662/1‑129 (MQ=255)                                                                         taCAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGAt                                                                                                <  2:507662/129‑1 (MQ=255)                                                                         taCAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAg                                                                           >  1:397264/1‑150 (MQ=255)                                                                         taCAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAg                                                                           >  2:230/1‑150 (MQ=255)                                                                            aGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACg                                                                                                                            <  1:393474/98‑1 (MQ=255)                                                                            aGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACg                                                                                                                            >  2:393474/1‑98 (MQ=255)                                                                            aGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCAtt                                                                                                               >  1:149784/1‑111 (MQ=255)                                                                            aGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCAtt                                                                                                               <  2:149784/111‑1 (MQ=255)                                                                                      tACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGttt                                                              >  1:508807/1‑150 (MQ=255)                                                                                       aCTCCAAGCGGCCATCGAAAAGCAAGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTg                                                             <  1:230/150‑1 (MQ=255)                                                                                         tCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTCCACCGCCAAAAACATAGCCGTGTATTTGACGAGGTAACTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCTGGGGACAGCTTCAGCCCGTTTGGt                                                           >  1:471807/1‑150 (MQ=255)                                                                                                           aGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGc                                         <  2:508807/150‑1 (MQ=255)                                                                                                              gtaactcgtcaacTCAACGGCCAGCCGTTCGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTATCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGCGTACAGCTAc                                      <  1:333177‑M1/137‑1 (MQ=255)                                                                                                                        aacTCAACGGCCAGCCGTTCGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGtt                            <  2:42513‑M1/147‑1 (MQ=255)                                                                                                                         actcaacggccagccgttcgccgttgaGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTc                                                                                    <  2:238813‑M2/66‑1 (MQ=255)                                                                                                                         actcaacggccagccgttcgccgttgaGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTc                                                                                    >  1:238813‑M2/28‑93 (MQ=255)                                                                                                                                                 tgagtggaCGTGCTACCTATTGGTGAACGTGTATCGTGCATTCAGCCCGGCTTTGATGCGCTTTGTGTCGGCGGACAGCTTCAGCCCGTTTTGTGAGAGTGGGGTGAACAGCTACGACTTTTGTTCGAATGATCCTGTTAATCCGCAGGa   <  2:41134/150‑1 (MQ=255)                                                                                                                                                  gaGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTTCGAATGATCCTGTTAATCGGCAGGAt  <  2:471807‑M2/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    AATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTTCGAATGATCCTGTTAATCGGCAGGAT  >  NC_002947/2301681‑2301975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.