New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4609894 =	28 (1.200)	4 (0.190)	3/234	NT	14.1%	coding (335/876 nt)	PP_4081	type IV/VI secretion system protein
	?	NC_002947	4609934 =	23 (1.070)					coding (375/876 nt)	PP_4081	type IV/VI secretion system protein

CCCAGGTCTCGTCGTGGAAGATGCTGAGCAGCGGCTCGTGGCTCCAGCAACTGCTTTTGCCCCAGGGCCGCTCCATCACCGCTTCATCGATGTACAGGCACAGGCCGTAGGAGTACGCCAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4610046‑4609894 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctggcgtaCTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCT  >  NC_002947/4609934‑4610080                                                                                                                                                                                                                                                                                                              CCCAGGTCTCGTCGTGGAAGATGCTGAGCAGCGGCTCGTGGCTCCAGCAACTGCTTTTGCCCCAGGGCCGCTCCATCACCGCTTCATCGATGTACAGGCACAGGCCGTAGGAGTACGCCAGCAACTGACCGGGTTCATATCCGTGCTGGC                                                                                                                                                        <  2:485228/150‑1                                                                                                                     GCCAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGA                                                                                                               >  1:434813/1‑75                                                                                                                     GCCAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGA                                                                                                               <  2:434813/75‑1                                                                                                                       CAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGgg                                                                             >  1:512665/1‑105                                                                                                                       CAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGgg                                                                             <  2:512665/107‑3                                                                                                                                                 GCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTAC        <  2:520671/150‑1                                                                                                                                                       GTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCT  >  1:379876/1‑150                                                                                                                                                                                                                                                                                                              CCCAGGTCTCGTCGTGGAAGATGCTGAGCAGCGGCTCGTGGCTCCAGCAACTGCTTTTGCCCCAGGGCCGCTCCATCACCGCTTCATCGATGTACAGGCACAGGCCGTAGGAGTACGCCAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4610046‑4609894 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctggcgtaCTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCT  >  NC_002947/4609934‑4610080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.