New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4609894 =	28 (1.200)	4 (0.190)	3/234	NT	14.1%	coding (335/876 nt)	PP_4081	type IV/VI secretion system protein
	?	NC_002947	4609934 =	23 (1.070)					coding (375/876 nt)	PP_4081	type IV/VI secretion system protein

CTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCT  >  NC_002947/4609800‑4610080                                                                                                                                       |                                                                                                                                                   atGGTAATGCGCCTGCGCACGCTCGATGAACGGCCCAACATCAAAGATTTGAAGCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACAGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGgcctgtgc                                                                                                                                     <  2:81813/149‑1 (MQ=37)             cTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCCAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGAt                                                                                                                         <  1:193519/150‑1 (MQ=255)             cTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGAt                                                                                                                         <  1:199050/150‑1 (MQ=255)                  cACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGc                                                                                                                    >  1:585250/1‑150 (MQ=255)                         gATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATg                                                                                                             >  1:320450/1‑150 (MQ=255)                           tGAACTGCCCAACATAAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGa                                                                                                           >  2:210905/1‑150 (MQ=255)                                                  tgCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGgc                                                                                                                                           >  1:300000/1‑95 (MQ=255)                                                  tgCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGgc                                                                                                                                           <  2:300000/95‑1 (MQ=255)                                                       cAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTgg                                                                               >  1:374342/1‑150 (MQ=255)                                                               gCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGa                                                                       <  1:371192/150‑1 (MQ=255)                                                                  tATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGa                                                                              >  1:106038/1‑140 (MQ=255)                                                                  tATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGa                                                                              <  2:106038/140‑1 (MQ=255)                                                                       aGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAg                                                                                                                     >  2:129015/1‑96 (MQ=255)                                                                       aGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAg                                                                                                                     <  1:129015/96‑1 (MQ=255)                                                                       aGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCgctgc                                                               >  1:520671/1‑150 (MQ=255)                                                                             aCAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCt                                                                                 <  2:104010/126‑1 (MQ=255)                                                                             aCAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCt                                                                                 >  1:104010/1‑126 (MQ=255)                                                                               aGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTggg                                                                                                >  2:288056/1‑109 (MQ=255)                                                                               aGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTggg                                                                                                <  1:288056/109‑1 (MQ=255)                                                                                   tCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCaaa                                                                                           >  1:8164/1‑110 (MQ=255)                                                                                   tCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCaaa                                                                                           <  2:8164/110‑1 (MQ=255)                                                                                        gaagaaATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCacgac                                              <  2:585250/150‑1 (MQ=255)                                                                                                  gccagcaactgagcgggctcatagccgtgctggcgtaCTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGa                                                                                                               >  1:434813‑M2/38‑75 (MQ=255)                                                                                                  gccagcaactgagcgggctcatagccgtgctggcgtaCTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGa                                                                                                               <  2:434813‑M2/38‑1 (MQ=255)                                                                                                  GCCAGCACGGATATGAACCCGGTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCtggg                                    <  2:485228‑M1/150‑1 (MQ=255)                                                                                                    cagcaactgagcgggctcatagccgtgctggcgtaCTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGctgggg                                                                             >  1:512665‑M2/36‑105 (MQ=255)                                                                                                    cagcaactgagcgggctcatagccgtgctggcgtaCTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGctgggg                                                                             <  2:512665‑M2/72‑3 (MQ=255)                                                                                                                  gCCCGCTCAGTTGCTGGCGTCCGCCTACGACCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGCGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGGGGAAAAAATCtt                    <  1:490991/150‑1 (MQ=255)                                                                                                                              gctggcgtaCTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTAc        <  2:520671‑M2/141‑1 (MQ=255)                                                                                                                                    gtaCTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCt  >  1:379876‑M2/4‑150 (MQ=255)                                                                                                                                       |                                                                                                                                                   CTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCT  >  NC_002947/4609800‑4610080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.