| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4609894 = | 28 (1.200) | 4 (0.190) | 3/234 | NT | 14.1% | coding (335/876 nt) | PP_4081 | type IV/VI secretion system protein |
| ? | NC_002947 | 4609934 = | 23 (1.070) | coding (375/876 nt) | PP_4081 | type IV/VI secretion system protein | |||||
CTCAGGGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGAC > NC_002947/4609746‑4610036 | cTCAGGGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATa > 2:193519/1‑150 (MQ=255) aggcgggtaatcacggtgaagattttttccccaccccaggtctcgtcgtggaagatgctgagcagcggctcgtggctccagcaactgcttttgccccagggccgctccatcaccgcttcatcgatgtacaggcacaggccgtaggagTAc > 1:379876‑M1/148‑150 (MQ=255) gggTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCa < 1:326632/150‑1 (MQ=255) gtaatcacggtgaagattttttccccaccccaggtctcgtcgtggaagatgctgagcagcggctcgtggctccagcaactgcttttgccccagggccgctccatcaccgcttcatcgatgtacaggcacaggccgtaggagTACGCCAGc < 2:520671‑M1/9‑1 (MQ=255) gCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACg > 2:608672/1‑150 (MQ=255) gcCAATCTCATGCTGGATTGTGCTGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTAGCTCCGAAGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTAt < 1:194401/150‑1 (MQ=255) gcCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTAt < 1:399209/150‑1 (MQ=255) ctcATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGccc < 1:214240/150‑1 (MQ=255) ggATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGtt > 2:371192/1‑150 (MQ=255) atGGTAATGCGCCTGCGCACGCTCGATGAACGGCCCAACATCAAAGATTTGAAGCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACAGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGgcctgtgc < 2:81813/149‑1 (MQ=37) cTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCCAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGAt < 1:193519/150‑1 (MQ=255) cTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGAt < 1:199050/150‑1 (MQ=255) cACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGc > 1:585250/1‑150 (MQ=255) ccccagcaactgcttttgccccagggccgctccatcaccgcttcatcgatgtacaggcacaggccgtaggagTACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTg > 1:512665‑M1/73‑107 (MQ=255) ccccagcaactgcttttgccccagggccgctccatcaccgcttcatcgatgtacaggcacaggccgtaggagTACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTg < 2:512665‑M1/35‑1 (MQ=255) gATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATg > 1:320450/1‑150 (MQ=255) tGAACTGCCCAACATAAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGa > 2:210905/1‑150 (MQ=255) tgCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGgc > 1:300000/1‑95 (MQ=255) tgCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGgc < 2:300000/95‑1 (MQ=255) cAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTgg > 1:374342/1‑150 (MQ=255) tcaccgcttcatcgatgtacaggcacaggccgtaggagTACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGc > 1:434813‑M1/39‑75 (MQ=255) tcaccgcttcatcgatgtacaggcacaggccgtaggagTACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGc < 2:434813‑M1/37‑1 (MQ=255) gCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGa < 1:371192/150‑1 (MQ=255) tATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGa > 1:106038/1‑140 (MQ=255) tATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGa < 2:106038/140‑1 (MQ=255) aGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAg > 2:129015/1‑96 (MQ=255) aGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAg < 1:129015/96‑1 (MQ=255) aGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCgctgc > 1:520671/1‑150 (MQ=255) aCAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCt < 2:104010/126‑1 (MQ=255) aCAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCt > 1:104010/1‑126 (MQ=255) aGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTggg > 2:288056/1‑109 (MQ=255) aGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTggg < 1:288056/109‑1 (MQ=255) tCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCaaa > 1:8164/1‑110 (MQ=255) tCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCaaa < 2:8164/110‑1 (MQ=255) gaagaaATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCacgac < 2:585250/150‑1 (MQ=255) | CTCAGGGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGAC > NC_002947/4609746‑4610036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |