New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5512843 | 27 (1.160) | 4 (0.180) | 4/242 | NT | 13.2% | coding (431/858 nt) | urtD | ABC transporter ATP‑binding protein |
? | NC_002947 | = 5512868 | 27 (1.220) | coding (456/858 nt) | urtD | ABC transporter ATP‑binding protein |
CCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5512694‑5512843 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcCCACACCGACTTGTCGGTCTTCAGCGCCAGCTCCA < NC_002947/5512868‑5512834 CCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGC > 1:292346/1‑150 CCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCCCACACCGACTTGTCGGTCTTCAGCGCCAGCTCCA < 1:363391/149‑1 CCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCCCACACCGACTTGTCGGTCTTCAGCGCCAGCTCCA > 2:363391/1‑149 AGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCCCACACCGACTTGTCGGTCTTCAGCGCCAGCTCC > 1:198695/1‑110 AGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCCCACACCGACTTGTCGGTCTTCAGCGCCAGCTCC < 2:198695/110‑1 CCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5512694‑5512843 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcCCACACCGACTTGTCGGTCTTCAGCGCCAGCTCCA < NC_002947/5512868‑5512834 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |