New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5512843	27 (1.160)	4 (0.180)	4/242	NT	13.2%	coding (431/858 nt)	urtD	ABC transporter ATP‑binding protein
	?	NC_002947	= 5512868	27 (1.220)					coding (456/858 nt)	urtD	ABC transporter ATP‑binding protein

TTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCTGGAGATCGGCATGC  >  NC_002947/5512719‑5513010                                                                                                                                                      |                                                                                                                                               ttCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTgg                                                                                                                                                <  1:63104/150‑1 (MQ=255) ttCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTgg                                                                                                                                                >  2:63104/1‑150 (MQ=255)          acCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTg                                                                                                                                       <  1:327798/150‑1 (MQ=255)                  ccTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTGCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCGGGACGTGGCGCTGAAGCCCGACAAGTCGGTGTGGGCCAGCCTGGCcgcgcc                                                                                                                               >  1:286903/1‑149 (MQ=255)                    tGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGcc                                                                                                                             >  1:69102/1‑150 (MQ=255)                        ccGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACACTGTTCGAAGCGCTGACCGTGGTCGAGAACCAGGAGCGGGCGCTGAAGACCGACAGATCGATGTGGAGCGCGCTGGCCGCGCGccgggg                                                                                                                         >  2:485923/1‑146 (MQ=255)                              gAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGa                                                                                                                   >  1:267895/1‑150 (MQ=255)                                       ccAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGAccagcgcca                                                                                                          >  2:306632/1‑150 (MQ=255)                                              gCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATc                                                                                                   <  2:69102/150‑1 (MQ=255)                                                 cAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAg                                                                                                <  1:306632/150‑1 (MQ=255)                                                  aGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTGCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAgg                                                                                               >  2:596665/1‑150 (MQ=255)                                                      cGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGt                                                                                                                     <  1:285191/124‑1 (MQ=255)                                                      cGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGt                                                                                                                     >  2:285191/1‑124 (MQ=255)                                                               ccGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGaccac                                                                                  >  1:343307/1‑150 (MQ=255)                                                               ccGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGaccac                                                                                  >  1:382959/1‑150 (MQ=255)                                                                                ccACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGc                                                                 >  2:377299/1‑150 (MQ=255)                                                                                        ttCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCctgc                                                                       <  1:75755/136‑1 (MQ=255)                                                                                        ttCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCctgc                                                                       >  2:75755/1‑136 (MQ=255)                                                                                              gcgcTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAg                                                   <  2:343307/150‑1 (MQ=255)                                                                                                      cGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGCCCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCtt                                           >  2:508099/1‑150 (MQ=255)                                                                                                      cGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCtt                                           <  2:286903/150‑1 (MQ=255)                                                                                                             gagaACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCg                                    >  1:89885/1‑150 (MQ=255)                                                                                                               gaACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAgc                                                        >  1:406261/1‑128 (MQ=255)                                                                                                               gaACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAgc                                                        <  2:406261/128‑1 (MQ=255)                                                                                                                    tGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGgccagctccaggttctcgaacacggtcagcgcttcgaacactgtgggcttctggaacttgcggccaatgccggcctgggcgatctggtattcgctcatgcgggtcaggtcgagg                              >  2:363391‑M2/1‑35 (MQ=255)                                                                                                                    tGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGgccagctccaggttctcgaacacggtcagcgcttcgaacactgtgggcttctggaacttgcggccaatgccggcctgggcgatctggtattcgctcatgcgggtcaggtcgagg                              <  1:363391‑M2/149‑115 (MQ=255)                                                                                                                     ggAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGgccagctccaggttctcgaacacggtcagcgcttcgaacactgtgggcttctggaacttgcggccaatgccggcct                                                                    <  2:198695‑M2/110‑77 (MQ=255)                                                                                                                     ggAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGgccagctccaggttctcgaacacggtcagcgcttcgaacactgtgggcttctggaacttgcggccaatgccggcct                                                                    >  1:198695‑M2/1‑34 (MQ=255)                                                                                                                              gcTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGtt                   >  1:330150/1‑150 (MQ=255)                                                                                                                                 gAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAg                     >  2:507227/1‑145 (MQ=255)                                                                                                                                 gAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAg                     <  1:507227/145‑1 (MQ=255)                                                                                                                                 gAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCt                <  1:377299/150‑1 (MQ=255)                                                                                                                                     aCCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCTGgag            <  2:330150/150‑1 (MQ=255)                                                                                                                                               cGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCTGGAGATCGGCAtgc  <  2:89885/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                               TTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCTGGAGATCGGCATGC  >  NC_002947/5512719‑5513010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.