New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5512843	27 (1.160)	4 (0.180)	4/242	NT	13.2%	coding (431/858 nt)	urtD	ABC transporter ATP‑binding protein
	?	NC_002947	= 5512868	27 (1.220)					coding (456/858 nt)	urtD	ABC transporter ATP‑binding protein

CCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGG  >  NC_002947/5512694‑5512982                                                                                                                                                      |                                                                                                                                            ccGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGC                                                                                                                                             >  1:292346‑M1/1‑150 (MQ=255)           aGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGAcc                                                                                                                                   <  2:292346/150‑1 (MQ=255)                          ttCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTgg                                                                                                                    >  2:63104/1‑150 (MQ=255)                          ttCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTgg                                                                                                                    <  1:63104/150‑1 (MQ=255)                                   acCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTg                                                                                                           <  1:327798/150‑1 (MQ=255)                                     ccTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCccacaccgacttgtcggtcttcagcgccagctcca                                                                                                          >  2:363391‑M1/1‑114 (MQ=255)                                     ccTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCccacaccgacttgtcggtcttcagcgccagctcca                                                                                                          <  1:363391‑M1/149‑36 (MQ=255)                                           ccTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTGCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCGGGACGTGGCGCTGAAGCCCGACAAGTCGGTGTGGGCCAGCCTGGCcgcgcc                                                                                                   >  1:286903/1‑149 (MQ=255)                                             tGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGcc                                                                                                 >  1:69102/1‑150 (MQ=255)                                                 ccGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACACTGTTCGAAGCGCTGACCGTGGTCGAGAACCAGGAGCGGGCGCTGAAGACCGACAGATCGATGTGGAGCGCGCTGGCCGCGCGccgggg                                                                                             >  2:485923/1‑146 (MQ=255)                                                       gAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGa                                                                                       >  1:267895/1‑150 (MQ=255)                                                                ccAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGAccagcgcca                                                                              >  2:306632/1‑150 (MQ=255)                                                                       gCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATc                                                                       <  2:69102/150‑1 (MQ=255)                                                                          cAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAg                                                                    <  1:306632/150‑1 (MQ=255)                                                                           aGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCccacaccgacttgtcggtcttcagcgccagctcc                                                                                                           >  1:198695‑M1/1‑76 (MQ=255)                                                                           aGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCccacaccgacttgtcggtcttcagcgccagctcc                                                                                                           <  2:198695‑M1/110‑35 (MQ=255)                                                                           aGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTGCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAgg                                                                   >  2:596665/1‑150 (MQ=255)                                                                               cGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGt                                                                                         >  2:285191/1‑124 (MQ=255)                                                                               cGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGt                                                                                         <  1:285191/124‑1 (MQ=255)                                                                                        ccGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGaccac                                                      >  1:382959/1‑150 (MQ=255)                                                                                        ccGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGaccac                                                      >  1:343307/1‑150 (MQ=255)                                                                                                        cccACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGtgtg                                                                                                                     <  1:294240/71‑1 (MQ=255)                                                                                                        cccACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGtgtg                                                                                                                     >  2:294240/1‑71 (MQ=255)                                                                                                         ccACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGc                                     >  2:377299/1‑150 (MQ=255)                                                                                                                 ttCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCctgc                                           >  2:75755/1‑136 (MQ=255)                                                                                                                 ttCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCctgc                                           <  1:75755/136‑1 (MQ=255)                                                                                                                       gcgcTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAg                       <  2:343307/150‑1 (MQ=255)                                                                                                                               cGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGCCCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCtt               >  2:508099/1‑150 (MQ=255)                                                                                                                               cGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCtt               <  2:286903/150‑1 (MQ=255)                                                                                                                                      gagaACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCg        >  1:89885/1‑150 (MQ=255)                                                                                                                                        gaACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAgc                            <  2:406261/128‑1 (MQ=255)                                                                                                                                        gaACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAgc                            >  1:406261/1‑128 (MQ=255)                                                                                                                                             tGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGgccagctccaggttctcgaacacggtcagcgcttcgaacactgtgggcttctggaacttgcggccaatgccggcctgggcgatctggtattcgctcatgcgggtcaggtcgagg  >  2:363391‑M2/1‑35 (MQ=255)                                                                                                                                             tGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGgccagctccaggttctcgaacacggtcagcgcttcgaacactgtgggcttctggaacttgcggccaatgccggcctgggcgatctggtattcgctcatgcgggtcaggtcgagg  <  1:363391‑M2/149‑115 (MQ=255)                                                                                                                                              ggAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGgccagctccaggttctcgaacacggtcagcgcttcgaacactgtgggcttctggaacttgcggccaatgccggcct                                        <  2:198695‑M2/110‑77 (MQ=255)                                                                                                                                              ggAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGgccagctccaggttctcgaacacggtcagcgcttcgaacactgtgggcttctggaacttgcggccaatgccggcct                                        >  1:198695‑M2/1‑34 (MQ=255)                                                                                                                                                      |                                                                                                                                            CCGCCCCGACAGCGGCACGGCTTACTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAATACCAGATCGCCCAGGCCGGCATTGGCCGCAAGTTCCAGAAGCCCACAGTGTTCGAAGCGCTGACCGTGTTCGAGAACCTGGAGCTGGCGCTGAAGACCGACAAGTCGGTGTGGGCCAGCCTGGCCGCGCGCCTGAGCGGTGACCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGG  >  NC_002947/5512694‑5512982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.