New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5638996	17 (0.730)	4 (0.180)	4/248	NT	19.7%	coding (37/1320 nt)	PP_4950	hypothetical protein
	?	NC_002947	= 5639018	16 (0.700)					coding (59/1320 nt)	PP_4950	hypothetical protein

TTCGAAACCCTGGTCGGGGAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5638972‑5638996 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcTCGCCCGCCTGAAGGGCGGCGTGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCATCAGGCGTCTCCTCCGAATACATCGATCTGGCGGAACACACAGGCCGGCGAGGCGTGGCCGACCCGCACCACCTGATTGGGTTCGCCCTT  <  NC_002947/5639018‑5638871                                                                                                                                                                               TTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCATCAGGCGTCTCCTCCGAATACATCGATCTGGCGGAA                                                        <  1:277548/119‑1 TTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCATCAGGCGTCTCCTCCGAATACATCGATCTGGCGGAA                                                        >  2:277548/1‑119     AAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCATCAGGCGTCTCCTCCGAATACATCGATCTGGCGGAACACACAGGCCGGCGAGGCGTGGCCGA                              >  1:125690/1‑141     AAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCATCAGGCGTCTCCTCCGAATACATCGATCTGGCGGAACACACAGGCCGGCGAGGCGTGGCCGA                              <  2:125690/141‑1                        GCTCGCCCGCCTGAAGGGCGGCGTGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCATCAGGCGTCTCCTCCGAATACATCGATCTGGCGGAACACACAGGCCGGCGAGGCGTGGCCGACCCGCACCACCTGATTGGGTTCGCCCTT  <  1:303595/150‑1                                                                                                                                                                               TTCGAAACCCTGGTCGGGGAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5638972‑5638996 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcTCGCCCGCCTGAAGGGCGGCGTGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCATCAGGCGTCTCCTCCGAATACATCGATCTGGCGGAACACACAGGCCGGCGAGGCGTGGCCGACCCGCACCACCTGATTGGGTTCGCCCTT  <  NC_002947/5639018‑5638871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.