| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5638996 | 17 (0.730) | 4 (0.180) | 4/248 | NT | 19.7% | coding (37/1320 nt) | PP_4950 | hypothetical protein |
| ? | NC_002947 | = 5639018 | 16 (0.700) | coding (59/1320 nt) | PP_4950 | hypothetical protein | |||||
GCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAGGCCGGCGAAGTCAGCCAGGCCAGCGCGCAACTGCGGCTGGTGCGCGATGGGCGCCA > NC_002947/5638858‑5639144 | gCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCtt > 2:609542/1‑150 (MQ=255) cAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCCAg < 1:609542/150‑1 (MQ=255) aaGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAgc < 1:303595‑M2/150‑3 (MQ=255) ccAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCt > 1:215409/1‑150 (MQ=255) aTCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCgg < 1:220382/150‑1 (MQ=255) gtggtgCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACa < 1:270409/150‑1 (MQ=255) gtgCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTg > 2:280669/1‑150 (MQ=255) tCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCTCGCCCGCCTGAAGGGCGGCGTgcacctccccgaccagggttt > 1:125690‑M2/1‑120 (MQ=255) tCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCTCGCCCGCCTGAAGGGCGGCGTgcacctccccgaccagggttt < 2:125690‑M2/141‑22 (MQ=255) ccTGTGTGTTCCGACAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGttt < 1:280669/150‑1 (MQ=255) tgtTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCa > 2:600448/1‑150 (MQ=255) ttCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCTCGCCCGCCTGAAGGGCGGCGTgcacctccccgaccagggtttcgaa < 1:277548‑M2/119‑26 (MQ=255) ttCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCTCGCCCGCCTGAAGGGCGGCGTgcacctccccgaccagggtttcgaa > 2:277548‑M2/1‑94 (MQ=255) ttCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAg > 1:468323/1‑146 (MQ=255) ttCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAg < 2:468323/146‑1 (MQ=255) gaCGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAGGCCGGCGAAGTCa < 1:600448/150‑1 (MQ=255) tgaAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAGGCCGGCGAAGTCAgccaggcca < 2:215409/150‑1 (MQ=255) gaAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAGGCCGGCGAAGTCAgccaggccag > 1:63414/1‑150 (MQ=255) gCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAGGCCGGCGAAGTCAGCCAGGCCAgcgc > 2:473797/1‑150 (MQ=255) ttCGAAACCCTGGTCGGGGAGGTGCacgccgcccttcaggcgggcgagcacctccccgaccagggtttcgaaagcgtgcttcatcaggcgtctcctccgaatacatcgatctggcggaa > 2:277548‑M1/1‑25 (MQ=255) ttCGAAACCCTGGTCGGGGAGGTGCacgccgcccttcaggcgggcgagcacctccccgaccagggtttcgaaagcgtgcttcatcaggcgtctcctccgaatacatcgatctggcggaa < 1:277548‑M1/119‑95 (MQ=255) aaaCCCTGGTCGGGGAGGTGCacgccgcccttcaggcgggcgagcacctccccgaccagggtttcgaaagcgtgcttcatcaggcgtctcctccgaatacatcgatctggcggaacacacaggccggcgaggcgtggccga > 1:125690‑M1/1‑21 (MQ=255) aaaCCCTGGTCGGGGAGGTGCacgccgcccttcaggcgggcgagcacctccccgaccagggtttcgaaagcgtgcttcatcaggcgtctcctccgaatacatcgatctggcggaacacacaggccggcgaggcgtggccga < 2:125690‑M1/141‑121 (MQ=255) cccTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAGGCCGGCGAAGTCAGCCAGGCCAGCGCGCAACTGCGGCTgg < 2:63414/150‑1 (MQ=255) tGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAGGCCGGCGAAGTCAGCCAGGCCAGCGCGCAACTGCGGCTGGTgc > 2:42946/1‑150 (MQ=255) gggAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAGGCCGGCGAAGTCAGCCAGGCCAGCGCGCAACTGCGGCTGGTGCGCGATg < 1:413654/150‑1 (MQ=255) gCtcgcccgcctgaagggcggcgtgcacctccccgaccagggtttcgaaagcgtgcttcatcaggcgtctcctccgaatacatcgatctggcggaacacacaggccggcgaggcgtggccgacccgcaccacctgattgggttcgccctt < 1:303595‑M1/150‑149 (MQ=255) | GCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAGGCCGGCGAAGTCAGCCAGGCCAGCGCGCAACTGCGGCTGGTGCGCGATGGGCGCCA > NC_002947/5638858‑5639144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |