New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5918382 =	27 (1.160)	5 (0.250)	4/220	NT	19.5%	intergenic (+16/+79)	ygiF/PP_5188	thiamine triphosphatase/AsnC/Lrp family transcriptional regulator
	?	NC_002947	5918456 =	18 (0.890)					intergenic (+90/+5)	ygiF/PP_5188	thiamine triphosphatase/AsnC/Lrp family transcriptional regulator

CGAACGTGCCGGGGATTCAGGAGGTGAACTCGATTGTGGCGCTTTCCGAGATCAAGTCCACCACTAGCCTGCCGCTACCGCGGTGAGGCCATTCGCGGGTAAACCCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5918546‑5918382 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggtttacccgcgaaTGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGACAGTTTTTCGAAGAAGAACCGCTCGTAGGCCTCGATGTCCGA  >  NC_002947/5918456‑5918589                                                                                                                                                                                                                                                                                                             CGAACGTGCCGGGGATTCAGGAGGTGAACTCGATTGTGGCGCTTTCCGAGATCAAGTCCACCACTAGCCTGCCGCTACCGCGGTGAGGCCATTCGCGGGTAAACCCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGC                                                                                                                                                       <  1:310401/150‑1   AACGTGCCGGGGATTCAGGCGGTGAACTCGAGTGTGGCGCTTTCCGAGATCAAGTCCACCACTAGCCTGCCGCTACCGCGGTGAGGCCATTCGCGGGTAAACCCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGG                                                                                                                                                     <  1:289412/150‑1    ACGTGCCGGGGATTCAGGAGGTGAACTCGATTGTGGCGCTTTCCGAGATCAAGTCCACCACTAGCCTGCCGCTACCGCGGTGAGGCCATTCGCGGGTAAACCCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGG                                                                                                                                                    <  2:380283/150‑1           GGGGATTCAGGAGGTGAACTCTATTGTGGCGCTTTCCGAGATCAAGTCCACCACTAGCCTGCCGCTACCGCGGTGAGGCCATTCGCGGGTAAACCCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGAAGCGGGTTTACCC                                                                                                                                             >  1:246441/1‑150                                                                                                          CGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTC                                              >  2:57820/1‑150                                                                                                            CGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGA                                            >  1:56836/1‑150                                                                                                            CGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGA                                            >  2:238652/1‑150                                                                                                               CTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGACAG                                         <  1:238652/150‑1                                                                                                                         CTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGACAGTTTTTCGAAG                               <  2:56836/150‑1                                                                                                                                                      CGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGACAGTTTTTCGAAGAAGAACCGCTCGTAGGCCTCGATGTCCGA  <  1:586044/150‑1                                                                                                                                                                                                                                                                                                             CGAACGTGCCGGGGATTCAGGAGGTGAACTCGATTGTGGCGCTTTCCGAGATCAAGTCCACCACTAGCCTGCCGCTACCGCGGTGAGGCCATTCGCGGGTAAACCCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5918546‑5918382 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggtttacccgcgaaTGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGACAGTTTTTCGAAGAAGAACCGCTCGTAGGCCTCGATGTCCGA  >  NC_002947/5918456‑5918589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.