New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5918382 =	27 (1.160)	5 (0.250)	4/220	NT	19.5%	intergenic (+16/+79)	ygiF/PP_5188	thiamine triphosphatase/AsnC/Lrp family transcriptional regulator
	?	NC_002947	5918456 =	18 (0.890)					intergenic (+90/+5)	ygiF/PP_5188	thiamine triphosphatase/AsnC/Lrp family transcriptional regulator

GAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGACAGTTTTTCGAAGAAGAACCGCTCGTAGGCCTCGATGTCCGA  >  NC_002947/5918310‑5918589                                                                                                                                                   |                                                                                                                                      gAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGc                                                                                                                                    <  2:113317/150‑1 (MQ=255) gAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGc                                                                                                                                    >  1:63721/1‑150 (MQ=255)         tCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACcgc                                                                                                                            >  2:456979/1‑150 (MQ=255)            ggCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGt                                                                                                                         >  2:113413/1‑150 (MQ=255)               ggTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGc                                                                                                                      <  2:348289/150‑1 (MQ=255)                        gagCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTa                                                                                                             <  1:113413/150‑1 (MQ=255)                        cacccGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCTGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTTTAGTCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTa                                                                                                             <  2:199656/147‑1 (MQ=255)                                   ggAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACtt                                                                                                  <  1:456979/150‑1 (MQ=255)                                               tCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAg                                                                                      >  2:318239/1‑150 (MQ=255)                                                  agtcGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAgcgc                                                                                   <  2:249374/147‑1 (MQ=255)                                                         aTACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATc                                                                            <  2:294428/150‑1 (MQ=255)                                                              gcgTCCCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGtt                                                                       <  1:20734/150‑1 (MQ=255)                                                                              GGGTAAACCCGCTTCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATAGAGTTCACCTCCTGAATcccc                                                       >  1:246441‑M1/1‑150 (MQ=255)                                                                                     CCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGt                                                <  2:380283‑M1/150‑1 (MQ=255)                                                                                      CCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACACTCGAGTTCACCGCCTGAATCCCCGGCACGtt                                               <  1:289412‑M1/150‑1 (MQ=255)                                                                                       cgcgcctacaccggcctcacgcctggcgcgaacctttgtaggagcgggtttacccgcgaaTGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTc                                              >  2:57820‑M2/61‑150 (MQ=255)                                                                                        GCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCg                                             <  1:310401‑M1/150‑1 (MQ=255)                                                                                         cgcctacaccggcctcacgcctggcgcgaacctttgtaggagcgggtttacccgcgaaTGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGa                                            >  1:56836‑M2/59‑150 (MQ=255)                                                                                         cgcctacaccggcctcacgcctggcgcgaacctttgtaggagcgggtttacccgcgaaTGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGa                                            >  2:238652‑M2/59‑150 (MQ=255)                                                                                            ctacaccggcctcacgcctggcgcgaacctttgtaggagcgggtttacccgcgaaTGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGACAg                                         <  1:238652‑M2/95‑1 (MQ=255)                                                                                            cTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGACAg                                         >  2:586044/1‑150 (MQ=255)                                                                                                     ttCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGACAGTTTTTCgaa                                <  1:558703/150‑1 (MQ=255)                                                                                                      ctcacgcctggcgcgaacctttgtaggagcgggtttacccgcgaaTGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGACAGTTTTTCgaag                               <  2:56836‑M2/105‑1 (MQ=255)                                                                                                               gCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGACAGTTTTTCGAAGAAGAACCGc                      <  2:310401/150‑1 (MQ=255)                                                                                                                      gCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGAtctc                                                                                            <  2:451506/73‑1 (MQ=255)                                                                                                                      gCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGAtctc                                                                                            >  1:451506/1‑73 (MQ=255)                                                                                                                      gCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGACAGTTTTTCgaa                                <  1:267639/133‑1 (MQ=255)                                                                                                                      gCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGACAGTTTTTCgaa                                >  2:267639/1‑133 (MQ=255)                                                                                                                         ggTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGTTCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGACAGTTTTTCGAAGAAGAACCGCTCGTAGGCCt            <  1:318239/150‑1 (MQ=255)                                                                                                                                   cgggtttacccgcgaaTGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGACAGTTTTTCGAAGAAGAACCGCTCGTAGGCCTCGATGTCCGa  <  1:586044‑M2/134‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                      GAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTTCACCTCCTGAATCCCCGGCACGTTCGACAGTTTTTCGAAGAAGAACCGCTCGTAGGCCTCGATGTCCGA  >  NC_002947/5918310‑5918589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.