New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5918382 =	27 (1.160)	5 (0.250)	4/220	NT	19.5%	intergenic (+16/+79)	ygiF/PP_5188	thiamine triphosphatase/AsnC/Lrp family transcriptional regulator
	?	NC_002947	5918456 =	18 (0.890)					intergenic (+90/+5)	ygiF/PP_5188	thiamine triphosphatase/AsnC/Lrp family transcriptional regulator

CTTGTACGGCGACCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTT  >  NC_002947/5918234‑5918520                                                                                                                                                     |                                                                                                                                           cTTGTACGGCGACCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCtt                                                                                                                                           >  1:348289/1‑150 (MQ=255)         gCGACCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTa                                                                                                                                   >  1:315295/1‑150 (MQ=255)               tcggacatcgaggcctacgagcggttcttcttcgaaaaactgtcgaacgtgccggggattcaggaggtgaactcgattgtggcgctttccgagatcaagtccaccactagcctgccgctaccgcggtgaggccaTTCGCGGGTAAACCCg                                                                                                                             <  1:586044‑M1/16‑1 (MQ=255)                      gCTGCCCGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGGCGCCTGCTTCGCGGGTAAACCCGCTCCTAc                                                                                                                      >  2:558703/1‑150 (MQ=255)                                cTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTcgc                                                                                                            <  2:315295/150‑1 (MQ=255)                                cTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGACTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTcgc                                                                                                            <  1:112402/150‑1 (MQ=255)                                   gCCGAGCAGCCCATCAGCGAGGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGCCTGGAAGCACCTGCTCAAGGCGTGATACCGCGGCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCTCGcc                                                                                                         >  2:20734/1‑150 (MQ=255)                                            cttcgaaaaactgtcgaacgtgccggggattcaggaggtgaactcgattgtggcgctttccgagatcaagtccaccactagcctgccgctaccgcggtgaggccaTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAg                                                                                                <  2:56836‑M1/45‑1 (MQ=255)                                               aTCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGcc                                                                                             >  1:113317/1‑150 (MQ=255)                                                 cAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAg                                                                                                       <  1:437982/138‑1 (MQ=255)                                                 cAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAg                                                                                                       >  2:437982/1‑138 (MQ=255)                                                     gATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTa                                                                                       >  1:456102/1‑150 (MQ=255)                                                      ctgtcgaacgtgccggggattcaggaggtgaactcgattgtggcgctttccgagatcaagtccaccactagcctgccgctaccgcggtgaggccaTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAg                                                                                      <  1:238652‑M1/55‑1 (MQ=255)                                                      aTGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAg                                                                                      <  2:521142/150‑1 (MQ=255)                                                         tcgaacgtgccggggattcaggaggtgaactcgattgtggcgctttccgagatcaagtccaccactagcctgccgctaccgcggtgaggccaTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGgcg                                                                                   >  1:56836‑M1/93‑150 (MQ=255)                                                         tcgaacgtgccggggattcaggaggtgaactcgattgtggcgctttccgagatcaagtccaccactagcctgccgctaccgcggtgaggccaTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGgcg                                                                                   >  2:238652‑M1/93‑150 (MQ=255)                                                           gaacgtgccggggattcaggaggtgaactcgattgtggcgctttccgagatcaagtccaccactagcctgccgctaccgcggtgaggccaTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGcgcg                                                                                 >  2:57820‑M1/91‑150 (MQ=255)                                                                    gcgcGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGAGTCGAATGCTTCGCGGGTACACCCGCTCCTTCAGAGGTTCGTGCCAGGCGTTATGCCGGTGTAGGCGCGGGTTTAccc                                                                        <  2:70467/150‑1 (MQ=255)                                                                      gcgTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTa                                                                                       >  2:246976/1‑133 (MQ=255)                                                                      gcgTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTa                                                                                       <  1:246976/133‑1 (MQ=255)                                                                             gAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGc                                                               <  2:113317/150‑1 (MQ=255)                                                                             gAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGc                                                               >  1:63721/1‑150 (MQ=255)                                                                                   gCTCGGGCGTTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGt                                                                              <  1:401441/129‑1 (MQ=255)                                                                                   gCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGt                                                                              >  2:401441/1‑129 (MQ=255)                                                                                     tCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACcgc                                                       >  2:456979/1‑150 (MQ=255)                                                                                        ggCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGt                                                    >  2:113413/1‑150 (MQ=255)                                                                                           ggTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGc                                                 <  2:348289/150‑1 (MQ=255)                                                                                                    gagCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTa                                        <  1:113413/150‑1 (MQ=255)                                                                                                    cacccGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCTGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTTTAGTCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTa                                        <  2:199656/147‑1 (MQ=255)                                                                                                               ggAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACtt                             <  1:456979/150‑1 (MQ=255)                                                                                                                           tCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAg                 >  2:318239/1‑150 (MQ=255)                                                                                                                              agtcGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAgcgc              <  2:249374/147‑1 (MQ=255)                                                                                                                                     aTACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATc       <  2:294428/150‑1 (MQ=255)                                                                                                                                          gcgTCCCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGtt  <  1:20734/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                           CTTGTACGGCGACCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCTCCTACAAAGGTTCGCGCCAGGCGTGAGGCCGGTGTAGGCGCGGGTTTACCCGCGAATGGCCTCACCGCGGTAGCGGCAGGCTAGTGGTGGACTTGATCTCGGAAAGCGCCACAATCGAGTT  >  NC_002947/5918234‑5918520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.