| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1586680 | 18 (0.770) | 3 (0.130) | 3/244 | NT | 15.3% | coding (768/909 nt) | PP_1391 | LysR family transcriptional regulator |
| ? | NC_002947 | = 1586719 | 16 (0.710) | coding (729/909 nt) | PP_1391 | LysR family transcriptional regulator | |||||
GTATAGATCCCGATCCCACGCCGGTTCGTCCTTGAAACGCTGCACCAGGAAATCCAGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCGGATACGGGCACGGCGACCTGC > NC_002947/1586542‑1586827 | gTATAGATCCCGATCCCACGCCGGTTCGTCCTTGAAACGCTGCACCAGGAAATCCAGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAc < 1:605960/150‑1 (MQ=255) atcccgatcccACGCCGGTTCGTCCTTGAAACGCTGCACCAGGAAATCCAGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGgca < 2:388362/134‑1 (MQ=255) atcccgatcccACGCCGGTTCGTCCTTGAAACGCTGCACCAGGAAATCCAGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGgca > 1:388362/1‑134 (MQ=255) tcccgatcccACGCCGGTTCGTCCTTGAAACGCTGCACCAGGAAATCCAGCATGCTGCGCAAGGTAGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCa > 1:296111/1‑150 (MQ=255) ttGAAACGCTGCACCAGGAAATCCAGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGTCTCAGGCcgcagacgccatacgccggggtgaactggtgcgtctgctgcc < 1:436016‑M1/150‑43 (MQ=255) aaaCGCTGCACCAGGAAATCCAGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTgg > 1:158416/1‑150 (MQ=255) aaaCGCTGCACCAGGAAATCCAGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTgg < 2:434678/150‑1 (MQ=255) aaTCCAGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGCCGCAC‑CCGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATgg > 2:587499/1‑150 (MQ=255) aaTCCAGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATgg < 1:222832/150‑1 (MQ=255) aGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATa > 2:11233/1‑150 (MQ=255) gCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATAc < 2:296111/150‑1 (MQ=255) gCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCa < 2:158416/150‑1 (MQ=255) ccGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCcgcagacgccatacgccggggtgaactggtgcgtctgctgcctgaggc < 2:159892‑M1/113‑49 (MQ=255) ccGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCcgcagacgccatacgccggggtgaactggtgcgtctgctgcctgaggc > 1:159892‑M1/1‑65 (MQ=255) ggCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACg < 1:393200/71‑1 (MQ=255) ggCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACg > 2:393200/1‑71 (MQ=255) gtTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCa < 2:53988/150‑1 (MQ=255) tGCGCGACGTATACACCGCATTCAGGTTCATTTCACGCTCTTTGGCCTCAGGCAGCAGACGTACACAG‑CGAGGGCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAggg < 1:11233/150‑1 (MQ=255) tGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAggg < 1:587499/150‑1 (MQ=255) tCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGa > 2:370461/1‑150 (MQ=255) agttcaCGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCg < 1:370461/150‑1 (MQ=255) ttcaCGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCGGa > 2:134264/1‑150 (MQ=255) gCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGgcctgaggccaaaccgcgtgaactgaacctgaatgcggtgtatacgtcgcgcaaacacatgccgg > 1:159892‑M2/1‑48 (MQ=255) gCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGgcctgaggccaaaccgcgtgaactgaacctgaatgcggtgtatacgtcgcgcaaacacatgccgg < 2:159892‑M2/113‑66 (MQ=255) ccTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCGGATACGGGCACGGCGa > 2:185057/1‑150 (MQ=255) ggCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGgcctgagaccaaaccgcgtgaactgaacctgaatgcggtgtatacgtcgcgcaaacacatgccggcgaccttgcgcagcatgctggatttcctggtgcagcgtttcaa < 1:436016‑M2/150‑109 (MQ=255) | GTATAGATCCCGATCCCACGCCGGTTCGTCCTTGAAACGCTGCACCAGGAAATCCAGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCGGATACGGGCACGGCGACCTGC > NC_002947/1586542‑1586827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |